PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2591390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRF
Protein Properties Length: 339aa    MW: 38673.4 Da    PI: 7.634
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2591390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-2477121145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Lj3g3v2591390.1  77 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVEV 121
                      79****************************************985 PP
2QLQ56.58.4e-201147137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L++ i++
  Lj3g3v2591390.1 11 SPFTPTQWQELEQQALVFKYMVTGTPIPPDLIFSIKR 47
                     89*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-121147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.3211247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-141245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65877121IPR014977WRC domain
PfamPF088795.9E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMSTASARNR SPFTPTQWQE LEQQALVFKY MVTGTPIPPD LIFSIKRSLD SSVSSRLFPH  60
HPIGWGCFEM GFGRKVDPEP GRCRRTDGKK WRCSKEAYAD SKYCERHMHR GRNRSRKPVE  120
VSSTPLTTTT ATNTPSYTNR NLSLSNNNNM TSPSSFPFSP LPSSIESQNF SQSYQNPSLN  180
PFFYSQSASS RTPDSDFSTQ DATTHQLFMD SASYSQDEKD FRNVHGMREG VDERAFFPEA  240
SGSAASARSY PDSYQQLSMG SYKSYSNSQF QNINDNPRQE EQHLFVLGTD FKSTRQSKEI  300
KENETTTQKP LHHFFEDWPP KNTDSWLDLS SNSRIPTDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.52161e-67floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2591390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405895.10.0PREDICTED: growth-regulating factor 5-like isoform X3
TrEMBLA0A0S3SZU00.0A0A0S3SZU0_PHAAN; Uncharacterized protein
STRINGXP_007135443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-65growth-regulating factor 5