PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj3g3v2578300.1 | ||||||||
Common Name | nsp1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 57aa MW: 6471.21 Da PI: 4.4298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 23.3 | 7e-08 | 10 | 53 | 303 | 346 |
GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +++re +e++ekW r++eaGF ++e+a++ ++llrk++s Lj3g3v2578300.1 10 TNQREMNEEKEKWCGRMKEAGFAGEVFGEDAVDGGRALLRKYDS 53 567899999********************************984 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.001 | 1 | 57 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-5 | 10 | 53 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 57 aa Download sequence Send to blast |
MEGEAAKALT NQREMNEEKE KWCGRMKEAG FAGEVFGEDA VDGGRALLRK YDSNWEM |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj3g3v2578300.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF012819 | 3e-91 | EF012819.1 Lotus japonicus nodulation signaling pathway 1 protein (nsp1) gene, complete cds. | |||
GenBank | EF017372 | 3e-91 | EF017372.1 Lotus japonicus truncated nodulation signaling pathway 1 protein (nsp1) gene, nsp1-1 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627294.2 | 2e-30 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 2e-30 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A1DR75 | 3e-31 | A1DR75_LOTJA; Truncated nodulation signaling pathway 1 protein | ||||
STRING | AET01770 | 1e-28 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-20 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|