PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2576220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 497aa MW: 56813.4 Da PI: 9.1864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 476 | 496 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lCr+++r G C +Gd+Ck+ H+ Lj3g3v2576220.1 476 LCRYYSR-GRCYFGDNCKYLHD 496 9******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.720.30 | 5.4E-9 | 87 | 131 | IPR003034 | SAP domain |
SuperFamily | SSF68906 | 5.86E-8 | 87 | 131 | No hit | No description |
Pfam | PF02037 | 2.0E-10 | 96 | 130 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 10.366 | 96 | 130 | IPR003034 | SAP domain |
SMART | SM00513 | 7.4E-5 | 96 | 130 | IPR003034 | SAP domain |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-7 | 468 | 496 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.3 | 471 | 497 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 472 | 497 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 473 | 496 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-5 | 476 | 496 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MATQMEEEEM HQITSNDDSE GSSYLGSEFD DSEGDPDFEI LEETQISFSN LSVTSKAKAR 60 SVKGKGLATT ENDPQVPSPD DDDFEIVQKT INAGLLEKLK VDECKLYLRK NGLRLTGNKA 120 TLIQRIKEHL EIVNGEGEKK YPPSSFVLNC KGDACTGDVV LFEQNVYEMF SIASRSATGP 180 PCGKRTVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLRP LYPLLIKGRN LYRLKTLRQK 240 WEDEGKRQQI LMEKHSRGFV ARADREVRVQ EKEKRKNIRE KRISKKDSVR NQCQSHSHIV 300 VPRYQTQETD VSMNSEKAEF PSQNSGLSDH ATKQTSAIIS KPTMGSDQLG YSGKTPFTVN 360 HMYNQQSLKS SADCMSTFNR GAERSANYNR NDFHSRDNRT TIEKRSTFGR GAELSANYNR 420 NDFHSRENRT TIEKRHPSIA ERNGFTERTY RREPLANANH FHPLTPNRES FRQGQLCRYY 480 SRGRCYFGDN CKYLHDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2576220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009712 | 0.0 | AP009712.1 Lotus japonicus genomic DNA, clone: LjT14E23, TM1775, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027336824.1 | 0.0 | zinc finger CCCH domain-containing protein 62-like | ||||
TrEMBL | A0A371G326 | 0.0 | A0A371G326_MUCPR; Zinc finger CCCH domain-containing protein 62 (Fragment) | ||||
STRING | XP_004510536.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11652 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-06 | zinc finger WD40 repeat protein 1 |