PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2576220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 497aa    MW: 56813.4 Da    PI: 9.1864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2576220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07476496526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      lCr+++r G C +Gd+Ck+ H+
  Lj3g3v2576220.1 476 LCRYYSR-GRCYFGDNCKYLHD 496
                      9******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.305.4E-987131IPR003034SAP domain
SuperFamilySSF689065.86E-887131No hitNo description
PfamPF020372.0E-1096130IPR003034SAP domain
PROSITE profilePS5080010.36696130IPR003034SAP domain
SMARTSM005137.4E-596130IPR003034SAP domain
Gene3DG3DSA:4.10.1000.105.9E-7468496IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3471497IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4472497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7473496IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5476496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MATQMEEEEM HQITSNDDSE GSSYLGSEFD DSEGDPDFEI LEETQISFSN LSVTSKAKAR  60
SVKGKGLATT ENDPQVPSPD DDDFEIVQKT INAGLLEKLK VDECKLYLRK NGLRLTGNKA  120
TLIQRIKEHL EIVNGEGEKK YPPSSFVLNC KGDACTGDVV LFEQNVYEMF SIASRSATGP  180
PCGKRTVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLRP LYPLLIKGRN LYRLKTLRQK  240
WEDEGKRQQI LMEKHSRGFV ARADREVRVQ EKEKRKNIRE KRISKKDSVR NQCQSHSHIV  300
VPRYQTQETD VSMNSEKAEF PSQNSGLSDH ATKQTSAIIS KPTMGSDQLG YSGKTPFTVN  360
HMYNQQSLKS SADCMSTFNR GAERSANYNR NDFHSRDNRT TIEKRSTFGR GAELSANYNR  420
NDFHSRENRT TIEKRHPSIA ERNGFTERTY RREPLANANH FHPLTPNRES FRQGQLCRYY  480
SRGRCYFGDN CKYLHDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2576220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097120.0AP009712.1 Lotus japonicus genomic DNA, clone: LjT14E23, TM1775, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336824.10.0zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A371G3260.0A0A371G326_MUCPR; Zinc finger CCCH domain-containing protein 62 (Fragment)
STRINGXP_004510536.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-06zinc finger WD40 repeat protein 1