PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2427550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 176aa MW: 20230.2 Da PI: 8.3058 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.4 | 3.3e-09 | 126 | 146 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldDgy+WrKYGqK++ g++f+ Lj3g3v2427550.1 126 LDDGYSWRKYGQKDILGAKFT 146 59***************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-7 | 120 | 146 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.501 | 121 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-6 | 125 | 146 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-4 | 126 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-6 | 127 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEENMKCEQV GLIGELMQGK ELTKQLCDHL ISSSSSSNVT NEVLIEKILF SYEKALTMLN 60 WKANVEDSKM SNGTMMDSHC SYDGSPRSEV LDPEVKHKNV FKKRKTMPKW TSQVRVCSGT 120 AIEGSLDDGY SWRKYGQKDI LGAKFTSYTN TFYLIHSFIV NFVVRSFSFY IYKFHL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.10718 | 0.0 | cell culture| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2427550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378640 | 7e-86 | AB378640.1 Lotus japonicus LjWRKY30 mRNA for transcription factor WRKY, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028239417.1 | 1e-67 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A445JSZ8 | 2e-66 | A0A445JSZ8_GLYSO; Putative WRKY transcription factor 41 | ||||
STRING | GLYMA07G06320.1 | 7e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF36831 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 8e-24 | WRKY DNA-binding protein 30 |