PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2057510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GATA
Protein Properties Length: 306aa    MW: 33572.9 Da    PI: 6.5065
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2057510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16226262135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Lj3g3v2057510.1 226 CRHCGTSEkcTPMMRRGPEGPRTLCNACGLMWANKGT 262
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.1E-1182117IPR010399Tify domain
PROSITE profilePS5132015.08682117IPR010399Tify domain
PfamPF062001.4E-1287116IPR010399Tify domain
PfamPF062031.3E-15150192IPR010402CCT domain
PROSITE profilePS5101712.6150192IPR010402CCT domain
PROSITE profilePS501149.222220268IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-12220273IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13221283No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15224267IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-14225267No hitNo description
PfamPF003201.6E-14226262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSINGGDSR THISDEQHSL LGPYVQEHEH HELHHMSNGN GIDDDQNNGD NTNCGGGESV  60
EGEVPSNHGN IHDNHTVMVD QASDGGDQLT LSFQGQVYVF DSVSPDKVQA VLLLLGGREI  120
PPTGPAMPVS PHQNNRGFSG TPPKFSVPQR IASLIRFHEK RKERNFEKKI RYTVRKEVAL  180
RMQRNKGQFT STKSNHDEST SNATNWGTNE NWTGDNNGSQ QQDIVCRHCG TSEKCTPMMR  240
RGPEGPRTLC NACGLMWANK GTLRDLSRAA ALMPGPNSSL NKNENKNPEA SQIVLRVPGD  300
ADESSS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2057510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344682.10.0GATA transcription factor 28
SwissprotQ8H1G01e-123GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A151RPA50.0A0A151RPA5_CAJCA; GATA transcription factor 25
STRINGGLYMA08G23720.21e-178(Glycine max)
STRINGXP_007142122.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-114ZIM-like 1