PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1953520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 27724.3 Da PI: 6.1378 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.5 | 4e-27 | 77 | 165 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k + rr+ra+tr gCka++++k +k+gkw++tk++++HnH+l+ Lj3g3v1953520.1 77 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 165 9***************************************9999999****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-24 | 77 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MESQLDDGND GMEVSEDVGL STYEVEIHRE TYEGDPNEGC RVLESTSGGE LGVSDDHAIQ 60 EPYEGMEFES EDAAKVFYDE YARHVGFVMR VMSCRRSERD GRILARRLGC NKEGHCLNIR 120 GKLGSIRRPR ASTREGCKAM IHIKYDKSGK WVITKFVKDH NHPLVVSPRE ARQTMDEKDK 180 KIQELTAEIR IKKRLCATYQ EQLSSFMKIV EEHSDKLSVK IHHIVNNLKE FEPIEELLHQ 240 T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1953520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004929 | 0.0 | AP004929.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT06J16, TM0083, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223879.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_020223880.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_029128871.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_029128872.1 | 1e-160 | protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A151SYH3 | 1e-158 | A0A151SYH3_CAJCA; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA04G12273.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-105 | FAR1 family protein |