PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1855350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 552aa    MW: 61281 Da    PI: 5.4199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1855350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed++lvd+vk++G g+W++I ++ g+ R++k+c++rw ++l
  Lj3g3v1855350.1 38 KGPWTSAEDDILVDYVKKHGEGNWNAIQKHTGLLRCGKSCRLRWANHL 85
                     79******************************99**********9986 PP
2Myb_DNA-binding45.12.3e-1491134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eE+ l+++++++ G++ W++ a++++ gRt++++k++w++
  Lj3g3v1855350.1  91 KGAITAEEERLIAELHAKIGNK-WARMAAHLP-GRTDNEIKNFWNT 134
                      6888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.573389IPR017930Myb domain
SMARTSM007171.4E-153787IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-2937132IPR009057Homeodomain-like
PfamPF002492.0E-163885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-243992IPR009057Homeodomain-like
CDDcd001671.65E-124085No hitNo description
PROSITE profilePS5129417.09690140IPR017930Myb domain
SMARTSM007173.3E-1490138IPR001005SANT/Myb domain
PfamPF002492.4E-1391134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2393138IPR009057Homeodomain-like
CDDcd001674.52E-1095134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MRMVKSEIED EVLSDYHTGS QLNDEGYEGR VCGVVLKKGP WTSAEDDILV DYVKKHGEGN  60
WNAIQKHTGL LRCGKSCRLR WANHLRPNLK KGAITAEEER LIAELHAKIG NKWARMAAHL  120
PGRTDNEIKN FWNTRIKRCQ RTGLPLYPPE VCLRASQESQ HGQSTDGLNG GNRVHPDFFQ  180
KKNYAIHDAI FDSLKDNLGI FPYTPELPDI SVYGSMLKEL DSSQHFSFVP STSSYHNHLQ  240
ESTIPSLDSN VMNRNDFYPF VHSRDNTYDK IALSFGMQSA LDPGPSSHSS ICYSHSLSNG  300
NSSASKPSSE ALKLELPSLQ YPEIDLGSWG TSPPPPLLES VDDFIQSPTP ISTLESYCPS  360
PQNSGLLDAL LYEAKTLRSS KNHCYEKSSN LSTATPGDKA DSSAVYMDET EWEDYSDPVS  420
PFGASSILNE CPAVSANANS LDARLPVQTF NGNIVKLEYA DQVWTPDSEN QTMSMLYTRP  480
DFLLASEWHE QGSGHVKSQA ITTNATSTLH EDDSAIDYKH MTAGTSKSSQ VWEHCSCAWN  540
NMPAICQVSD RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30361385106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1855350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102690.0AP010269.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT33A07, TM0672, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354365.10.0transcription factor MYB33-like isoform X2
TrEMBLA0A151RGG10.0A0A151RGG1_CAJCA; Transcription factor GAMYB
STRINGXP_007133583.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-104myb domain protein 65