PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v1855300.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 206aa MW: 22728.6 Da PI: 9.6413

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v1855300.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.8e-10	180	206	5	31
CHHHCHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeL 31 +r++r++kNRe+A rsR+RK+a++ eL Lj3g3v1855300.2 180 RRQKRMIKNRESAARSRARKQAYTNEL 206 79**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-8	169	206	No hit	No description
Pfam	PF00170	9.7E-8	180	206	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.03E-17	180	206	No hit	No description
SuperFamily	SSF57959	1.35E-5	180	206	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDNEGTAQAN QAAPQRQGSL SLSGALSKKT VDEVWRDIQQ NKDSEKKPRD RQPTLGEMTL 60 EDFLVKAGVV SDASSNKKND GTTAGIDPNV VVPQFPPQGQ WIPYPQPQYQ HPQQNLMGIY 120 MPSQGIAQSL HMGGCALLDV SYADNQVALP PPLMGTVSDM QIPGRKRSAP EDMVGKTVER 180 RQKRMIKNRE SAARSRARKQ AYTNEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5346	1e-112	floral bud\| pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v1855300.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010269	0.0	AP010269.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT33A07, TM0672, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027355242.1	1e-117	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-44	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A445JIT3	1e-110	A0A445JIT3_GLYSO; ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform B
STRING	GLYMA08G24340.1	1e-110	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	5e-39	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]