PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v1664580.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 667aa MW: 76250.9 Da PI: 6.1911

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v1664580.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.1	7.5e-114	293	664	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL+ cA+avss+d + a++lL+++++++ + gd+ qRla+yf+ +L+arl + ++++ + + ++ + ++ l+a+++f ++P+ kf+h Lj3g3v1664580.1 293 RTLLTLCAQAVSSNDYRTAHELLKQIRQHSYEFGDSSQRLAHYFASGLEARLDGDGTGTK--IFYMSLKKFTAADYLKAYQVFISACPFKKFAH 384 789************************************************9554443..433333445699**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + N++Il+ +e++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g +e++eetg+rLa+++e+++vpfe+++l+++++e Lj3g3v1664580.1 385 FFSNKMILKIAEKAETLHIIDFGILYGFQWPILIKILSKREGGPPKLRITGIEYPQAGfrPAERIEETGRRLASYCERFHVPFEYKALASRNWE 478 *****************************************************9**************************999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L++k++E laVn ++ ++l+de+ +++s+r+evL+l+++++P++++ + ++n++ F++rf eal +ysa++d++++ ++r++e+ Lj3g3v1664580.1 479 TIRIEDLDIKSNEILAVNTLVRFKNLHDETIEVNSPRNEVLSLIRKMNPDIFTQNIVNGSYNAPFFATRFKEALFHYSAMYDMFDTLISRTNEW 572 ******************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r ++Ere+lgrei+nvvaceg+er+er et+++W+ r +aGF+++pl++++++ + lr + + + +e++++++lgWk+r L++ ++W Lj3g3v1664580.1 573 RLMLEREFLGREIMNVVACEGFERVERPETYKQWQTRNVRAGFRQIPLDKEIMALFRGRLRAWYHKDFVFNEDHNWMLLGWKGRILYASTCW 664 ************************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.868	266	645	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-111	293	664	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEDTDFSETV KYISQILMEE NFEQKPCMCY DPLSLQHTER AFYDALEAEL PLSPNQHPLD 60 GDCSNADSGS SANSHGMRFL SPDSPVSSVS GDCSALSISQ TNSHVVVASQ SLTKTSDGVL 120 NLDLDSSVSK LLSENIFSDV DSVLQFRRGL EEASKFLPQS TQFFTGLESG KVSELPKGRE 180 GVKVDHGPRE NSNSNSNSNG LLKNRKNHVR EDRDDEERRS NKQSAVSSDD GGEISEMFDR 240 VLLSIENVPL CAEPVVQESS TEVEEQEQQP HSSDGFKPRS KRNGRKKETV DMRTLLTLCA 300 QAVSSNDYRT AHELLKQIRQ HSYEFGDSSQ RLAHYFASGL EARLDGDGTG TKIFYMSLKK 360 FTAADYLKAY QVFISACPFK KFAHFFSNKM ILKIAEKAET LHIIDFGILY GFQWPILIKI 420 LSKREGGPPK LRITGIEYPQ AGFRPAERIE ETGRRLASYC ERFHVPFEYK ALASRNWETI 480 RIEDLDIKSN EILAVNTLVR FKNLHDETIE VNSPRNEVLS LIRKMNPDIF TQNIVNGSYN 540 APFFATRFKE ALFHYSAMYD MFDTLISRTN EWRLMLEREF LGREIMNVVA CEGFERVERP 600 ETYKQWQTRN VRAGFRQIPL DKEIMALFRG RLRAWYHKDF VFNEDHNWML LGWKGRILYA 660 STCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEDTDFSETV KYISQILMEE NFEQKPCMCY DPLSLQHTER AFYDALEAEL PLSPNQHPLD  60
GDCSNADSGS SANSHGMRFL SPDSPVSSVS GDCSALSISQ TNSHVVVASQ SLTKTSDGVL  120
NLDLDSSVSK LLSENIFSDV DSVLQFRRGL EEASKFLPQS TQFFTGLESG KVSELPKGRE  180
GVKVDHGPRE NSNSNSNSNG LLKNRKNHVR EDRDDEERRS NKQSAVSSDD GGEISEMFDR  240
VLLSIENVPL CAEPVVQESS TEVEEQEQQP HSSDGFKPRS KRNGRKKETV DMRTLLTLCA  300
QAVSSNDYRT AHELLKQIRQ HSYEFGDSSQ RLAHYFASGL EARLDGDGTG TKIFYMSLKK  360
FTAADYLKAY QVFISACPFK KFAHFFSNKM ILKIAEKAET LHIIDFGILY GFQWPILIKI  420
LSKREGGPPK LRITGIEYPQ AGFRPAERIE ETGRRLASYC ERFHVPFEYK ALASRNWETI  480
RIEDLDIKSN EILAVNTLVR FKNLHDETIE VNSPRNEVLS LIRKMNPDIF TQNIVNGSYN  540
APFFATRFKE ALFHYSAMYD MFDTLISRTN EWRLMLEREF LGREIMNVVA CEGFERVERP  600
ETYKQWQTRN VRAGFRQIPL DKEIMALFRG RLRAWYHKDF VFNEDHNWML LGWKGRILYA  660
STCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-51	275	666	1	379	Protein SCARECROW
5b3h_D	5e-51	275	666	1	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v1664580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597373.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	G7IRV1	0.0	G7IRV1_MEDTR; GRAS family transcription factor
STRING	AES67624	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]