PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1338000.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 773aa    MW: 83851.8 Da    PI: 5.966
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1338000.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.6e-20102157156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Lj3g3v1338000.2 102 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 157
                      688999***********************************************999 PP
2START222.41.4e-692925121206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+ +a+ +ep+W +s     + +n+de++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ +     +a+t
  Lj3g3v1338000.2 292 ELAVAAMEELIGMAQMGEPLWLTSLdgttTVLNEDEYIRSFPRGIGpkpdgFKCEASRETSVVIMNHVNLVEILMDVN-QWSTVFSgivsRAMT 384
                      57899********************999999************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+aelq++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skvtwve
  Lj3g3v1338000.2 385 LEVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVTWVE 474
                      *************************************************************99....5************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv++++r +h+l+++lv+sg+a+gak+w +tl+rqce+
  Lj3g3v1338000.2 475 HVEVDERGVHNLYKQLVSSGHAFGAKRWISTLDRQCER 512
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-2381157IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1991159IPR009057Homeodomain-like
PROSITE profilePS5007116.95799159IPR001356Homeobox domain
SMARTSM003894.8E-19100163IPR001356Homeobox domain
CDDcd000863.91E-19102160No hitNo description
PfamPF000466.2E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
SuperFamilySSF559612.47E-35283514No hitNo description
PROSITE profilePS5084844.329283515IPR002913START domain
CDDcd088751.45E-130287511No hitNo description
SMARTSM002344.0E-62292512IPR002913START domain
PfamPF018522.2E-58293512IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-5386493IPR023393START-like domain
SuperFamilySSF559611.7E-24532765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MPAGIMIPAM NMPSMLGRNG DVGGSFGFSS SLSLSQPHLM EAHHQLHHHL DMAPQNTTSE  60
SDIAAAVRIR GEDEFDSATK SGSENQEGGA SGGDQDPRPN KKKRYHRHTQ HQIQEMESFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH ERQENTQLRT DNDKLRADNM  180
RLREALSNSS CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVVSYP  240
LLSPPSAPSR PLELGIGGFG GQPGVGGDMY GAGELLRSIS GPTEADKPII IELAVAAMEE  300
LIGMAQMGEP LWLTSLDGTT TVLNEDEYIR SFPRGIGPKP DGFKCEASRE TSVVIMNHVN  360
LVEILMDVNQ WSTVFSGIVS RAMTLEVLST GVAGNYNGAL QVMTAELQVP SPLVPTRESY  420
FVRYCKQHAD GTWAVVDVSL DNLRPSPSAR CRRRPSGCLI QEMPNGYSKV TWVEHVEVDE  480
RGVHNLYKQL VSSGHAFGAK RWISTLDRQC ERLASAMATN IPTVDVGVIT NQDGRKSMLK  540
LAERMVISFC AGVSASTAHT WTTISGTGAE TDDVRVMTRK SVDDPGRPPG IVLSAATSFW  600
LPVPPKRVFE FLRDENSRSE WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN  660
MLILQESCTD STGSFVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAVLPD GTTAHGGGIG  720
ETGHGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKAALSG EVA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1338000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926435.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3U6I10.0A0A1S3U6I1_VIGRR; homeobox-leucine zipper protein HDG2
STRINGXP_007149968.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2