PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1338000.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 740aa    MW: 80630.1 Da    PI: 5.9653
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1338000.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-2069124156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Lj3g3v1338000.1  69 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 124
                      688999***********************************************999 PP
2START222.51.3e-692594791206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+ +a+ +ep+W +s     + +n+de++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ +     +a+t
  Lj3g3v1338000.1 259 ELAVAAMEELIGMAQMGEPLWLTSLdgttTVLNEDEYIRSFPRGIGpkpdgFKCEASRETSVVIMNHVNLVEILMDVN-QWSTVFSgivsRAMT 351
                      57899********************999999************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+aelq++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skvtwve
  Lj3g3v1338000.1 352 LEVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVTWVE 441
                      *************************************************************99....5************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv++++r +h+l+++lv+sg+a+gak+w +tl+rqce+
  Lj3g3v1338000.1 442 HVEVDERGVHNLYKQLVSSGHAFGAKRWISTLDRQCER 479
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-2348124IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1958126IPR009057Homeodomain-like
PROSITE profilePS5007116.95766126IPR001356Homeobox domain
SMARTSM003894.8E-1967130IPR001356Homeobox domain
PfamPF000465.9E-1869124IPR001356Homeobox domain
CDDcd000863.60E-1969127No hitNo description
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SuperFamilySSF559612.25E-35250481No hitNo description
PROSITE profilePS5084844.329250482IPR002913START domain
CDDcd088752.95E-131254478No hitNo description
SMARTSM002344.0E-62259479IPR002913START domain
PfamPF018522.0E-58260479IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5353460IPR023393START-like domain
SuperFamilySSF559611.54E-24499732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MFQPHLMEAH HQLHHHLDMA PQNTTSESDI AAAVRIRGED EFDSATKSGS ENQEGGASGG  60
DQDPRPNKKK RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR  120
TQMKTQHERQ ENTQLRTDND KLRADNMRLR EALSNSSCPN CGGPTAIGEM SFDEHHLRLE  180
NARLREEIDR ISAIAAKYVG KPVVSYPLLS PPSAPSRPLE LGIGGFGGQP GVGGDMYGAG  240
ELLRSISGPT EADKPIIIEL AVAAMEELIG MAQMGEPLWL TSLDGTTTVL NEDEYIRSFP  300
RGIGPKPDGF KCEASRETSV VIMNHVNLVE ILMDVNQWST VFSGIVSRAM TLEVLSTGVA  360
GNYNGALQVM TAELQVPSPL VPTRESYFVR YCKQHADGTW AVVDVSLDNL RPSPSARCRR  420
RPSGCLIQEM PNGYSKVTWV EHVEVDERGV HNLYKQLVSS GHAFGAKRWI STLDRQCERL  480
ASAMATNIPT VDVGVITNQD GRKSMLKLAE RMVISFCAGV SASTAHTWTT ISGTGAETDD  540
VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKRVFEFLR DENSRSEWDI LSNGGVVQEM  600
AHIANGRDTG NCVSLLRVNS ANSSQSNMLI LQESCTDSTG SFVIYAPVDI VAMNVVLNGG  660
DPDYVALLPS GFAVLPDGTT AHGGGIGETG HGGSLLTVAF QILVDSVPTA KLSLGSVATV  720
NNLIACTVER IKAALSGEVA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1338000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027926435.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3U6I10.0A0A1S3U6I1_VIGRR; homeobox-leucine zipper protein HDG2
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2