PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1171240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 467aa    MW: 51652.9 Da    PI: 6.8599
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1171240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.11.2e-10177219446
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                       k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+
  Lj3g3v1171240.1 177 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQ 219
                      6889*************************98888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-4174231IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232176220IPR004827Basic-leucine zipper domain
PfamPF001707.5E-8177219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-7179222No hitNo description
SuperFamilySSF579591.5E-7180227No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
PfamPF141443.9E-29261335IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MASHRIGQLG LSESGPSSHH VPYGVLHRID TSSSSLINQG SSFDFGELEE AIALQGVNSR  60
NDEAKASFFT GKPAATLEMF PSWPMRINQT PRGGSKSGGE STDSALSSPF DPESPVSKKA  120
SSSENQQAFD QHQHLQQEIM ASDEAPRTGS SSQNQSAAKS QNQRKGAGST SDKPLDAKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQDLQR TQARSQGFFM DWGGVGGNIS  240
PGAAMFDMEY ARWLEDDSRL MAELRNGLQA PLSDSDMRVM VDGYLSHYDE VFRLKIVAAK  300
SDVFHLINGM WTSQAERCFL WIGGFRPSEL ITMLIQQLEP LAEQQIMGMY GVRHSSQQAE  360
EALSQGLDQL QQSLVDTIAG GPVVDGVQQM VVAMGKLANL EGFVRQADNL RQQTLHQLCR  420
LLTVRQAARC FLVIGEYYAR LRALSSLWAS RPRDNLMSDE NSCQTTT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1171240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238137.10.0transcription factor TGA9 isoform X2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A151RN100.0A0A151RN10_CAJCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGXP_007150072.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]