PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1113540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 313aa    MW: 33787.2 Da    PI: 8.5013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1113540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00072126148123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Lj3g3v1113540.1 126 YECKTCNRTFPSFQALGGHRASH 148
                      99**********99999998887 PP
2zf-C2H213.20.00026213235123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Lj3g3v1113540.1 213 HECSICGAEFTSGQALGGHMRRH 235
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-8125148No hitNo description
PfamPF139122.8E-13125150IPR007087Zinc finger, C2H2
SMARTSM003550.052126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637126153IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-8208235No hitNo description
SMARTSM003550.01213235IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-12213237IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMLSKMDINE GISKSIEELH VTTAKGKRTK RLRPWSPCAV AGAAAVTSSS SSGAADSSST  60
IEGADQEEED MANCLILLAQ GRGEERVIIP HHNKQKEGEM ENHVGDDNKS MMMMTEKTTK  120
IGFYVYECKT CNRTFPSFQA LGGHRASHKK PKATVTQEEK KSPPPPPAPR LTTSTSTRDF  180
EETRQTHVPH RVSLELGVNL HTNKSTNSKS KIHECSICGA EFTSGQALGG HMRRHRAVQA  240
AATVAASTGN NSAAVQIKPR IVLELDLNLP APEDDLRDSA FQIPATATQK SMVLSAAPAL  300
VGCHYSARVG IGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1113540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066740.0AP006674.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT30L06, TM0369c, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342577.12e-95zinc finger protein ZAT5
TrEMBLA0A0S3SGQ23e-79A0A0S3SGQ2_PHAAN; Uncharacterized protein
STRINGXP_007150141.18e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-52C2H2 family protein