PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1059090.1 | ||||||||
Common Name | ARF4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ARF | ||||||||
Protein Properties | Length: 794aa MW: 88069.5 Da PI: 6.78 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.3e-24 | 156 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el Lj3g3v1059090.1 156 FCKTLTASDTSTHGGFSVPRRAAEDCfpPLQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAVLFL--RGENGEL 247 99**************************777777889************************************************..4499999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Lj3g3v1059090.1 248 RLGIRRA 254 ****996 PP | |||||||
2 | Auxin_resp | 116.2 | 2.8e-38 | 279 | 361 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s +s+F+v+Y+Pras+++Fvv+++k+++++k++v+vG+Rfkm+f++++s+err+ sG+v+g+sdldp++Wp+SkWr+L Lj3g3v1059090.1 279 VANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPVTVGTRFKMKFDMDESPERRCsSGIVTGMSDLDPYKWPKSKWRCL 361 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.2E-41 | 148 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-38 | 149 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.77E-23 | 154 | 253 | No hit | No description |
PROSITE profile | PS50863 | 13.422 | 156 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-22 | 156 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-24 | 156 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-32 | 279 | 361 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.9E-8 | 657 | 751 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 20.772 | 666 | 750 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.24E-9 | 669 | 745 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MEIDLNDAVT EVDKNAYCNG DCENCASCVC SGSSSAIVSS SYLELWHACA GPLTSLPKKG 60 NVVVYFPQGH LEQAASFSPF SPLDVPTYDL HPQIFCKVAN VQLLANKEND EVYTQVTLLP 120 QAELEGIYLE GKELEGVGED VEGNGKTPAK STPHMFCKTL TASDTSTHGG FSVPRRAAED 180 CFPPLQQRPS QELVAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKK LVSGDAVLFL 240 RGENGELRLG IRRAARPRNG LPESIVGNQS CYPNFLSSVA NAISARSMFH VFYSPRASHA 300 DFVVPYHKYV RSIKNPVTVG TRFKMKFDMD ESPERRCSSG IVTGMSDLDP YKWPKSKWRC 360 LMVRWDEIVE TNHQDRVSPW EVDPSASLSP LSIQASRRLK KPRTDLEADS PNHLITGGSG 420 FMGFEESVRS PKVLQGQENT SFMSLYYGCD TVTKKPEFDI KSPSQPNLAS TGVRKITAAA 480 EVMRVHPFNY AGFTETNRLP RVLQGQEIFP LSSLTGKVDL SLGGWGNPHV SCTNYNLHQA 540 TKPSFHSLRP ELLQTAYFPF GDIHKAGQGF SMLCSKPTNF QRENVAFNAP STQSGIMRSE 600 VGLSDLTIPN EQKLQDNISG TAASLGANIR ILNDDNFDGK VNACKLFGFP LSGESTSQNL 660 QNTAKRSCTK VHKQGSLVGR AIDLSRLSSY NDLLSELERL FSMEGLLREP DKGWRVLYTD 720 RENDIMVVGD DPWHEFCNVV SKIHIYTQEE VEKMTIGMMS DDTQSSLEQA PLIMETSKSS 780 SVCQPDSSPT VVRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-115 | 25 | 389 | 2 | 359 | Auxin response factor 1 |
4ldw_A | 1e-115 | 25 | 389 | 2 | 359 | Auxin response factor 1 |
4ldw_B | 1e-115 | 25 | 389 | 2 | 359 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1059090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ617271 | 0.0 | FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027340131.1 | 0.0 | auxin response factor 4-like isoform X3 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | D3GBU8 | 0.0 | D3GBU8_LOTJA; Auxin response factor | ||||
STRING | XP_007150222.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |