PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0962150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 365aa    MW: 41011.3 Da    PI: 4.5586
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0962150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Lj3g3v0962150.1 16 RGPWSPEEDLKLIAFIQKHGHENWRSLPKQAGLQRCGKSCRLRWINYL 63
                     89********************************************97 PP
2Myb_DNA-binding53.55.7e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++k lG++ W++Ia+ ++ gRt++++k+ w+++l
  Lj3g3v0962150.1  69 RGNFTPEEQETIIRLHKSLGNK-WSKIASLLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25766IPR009057Homeodomain-like
PROSITE profilePS5129416.2981163IPR017930Myb domain
SuperFamilySSF466895.87E-3114110IPR009057Homeodomain-like
SMARTSM007171.3E-131565IPR001005SANT/Myb domain
PfamPF002494.9E-161663IPR001005SANT/Myb domain
CDDcd001676.45E-111863No hitNo description
PROSITE profilePS5129426.31464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2767118IPR009057Homeodomain-like
SMARTSM007174.3E-1568116IPR001005SANT/Myb domain
PfamPF002491.7E-1569114IPR001005SANT/Myb domain
CDDcd001679.85E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKGRATCCD KTQVKRGPWS PEEDLKLIAF IQKHGHENWR SLPKQAGLQR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEQETI IRLHKSLGNK WSKIASLLPG RTDNEIKNVW NTHLKKKLDP  120
KNSESSGDES KLQSSVTSSA SSSSESFFSN EGSNLANTPP VNEFMEQASE VTMTDKIEPD  180
SEKQVSNEVN GINENLKESS NSLSSLESSI LNSSQDIISY KPEQQLASPL IYPGPYDVDN  240
TLQEVDKPNH DLVEIPWESD YDIWSLLDSI ESFPPNEVPL GASQNHDLGV ESVQVTEAMK  300
WSHEFEGKAG VVGETNESNK DQFLPKNYAV EPQIDPPQTF HFNDMTSPAE SELDFDFIQL  360
WPSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29161197109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.259440.0pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0962150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635310.0JN863531.1 Lotus japonicus R2R3MYB transcription factor (MYB10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027340932.11e-161transcription factor MYB63
TrEMBLI3RSY10.0I3RSY1_LOTJA; R2R3MYB transcription factor (Fragment)
STRINGXP_007149313.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-73myb domain protein 63