PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0948220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 312aa    MW: 35721.2 Da    PI: 6.7758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0948220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Lj3g3v0948220.1 13 RGLWSPEEDEKLLKYITIHGHKSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP

2Myb_DNA-binding55.51.3e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Lj3g3v0948220.1  66 RGTFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-26563IPR009057Homeodomain-like
PROSITE profilePS5129419.071860IPR017930Myb domain
SuperFamilySSF466891.17E-2910107IPR009057Homeodomain-like
SMARTSM007173.1E-131262IPR001005SANT/Myb domain
PfamPF002496.4E-161360IPR001005SANT/Myb domain
CDDcd001676.41E-111660No hitNo description
PROSITE profilePS5129426.37261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2664116IPR009057Homeodomain-like
SMARTSM007171.9E-1665113IPR001005SANT/Myb domain
PfamPF002499.2E-1666109IPR001005SANT/Myb domain
CDDcd001671.11E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGHRCCSKQK IKRGLWSPEE DEKLLKYITI HGHKSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGTFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPQTHNLLAS HKRSSRNIIS HNNNQNSNSI FMLSSQNIPN ADPLGISQYF SSLPKAPPNI  180
VQTPSAIASS EYQTPNNILS NYKTLDFANE LLLTENCFPS CPNVWVSRFD DAEDFGVQTT  240
LEEGTRVQVQ QEKEKSCVEK GIDVREDNYK DSLEMSSFES CNFDFGLLES VLASEFISDH  300
DVNYMDEFAW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0948220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223087.11e-157transcription factor MYB86
TrEMBLA0A151SWA91e-152A0A151SWA9_CAJCA; Transcription factor MYB86
STRINGXP_007149171.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-89myb domain protein 67