PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj3g3v0938200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 39143.2 Da PI: 4.9088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182 | 1.5e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v Lj3g3v0938200.1 6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDLEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAV 98 79****************************.99**************96434555777************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g +t+Wvmheyrl Lj3g3v0938200.1 99 NS-QKKQVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 *9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-63 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.143 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MAPMTLPPGF RFHPTDEELV AYYLERKITG RSIELDIIAE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS QKKQVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLMESVPGA ALSSLKDSYS LCRIFKKPIQ VQAKPKEEDH EQAEEGAKKE 180 WFSEEQVLRE DSSTGTEISR EIETMDEKLL NHASSSDVTQ GTCTPTDRNK TCMADDFQAQ 240 FSCDEANSAA NSYPMGILGY PSNLFQDIEI PMYGMHYQLP QTPLVLEDFP QMNLTESMKP 300 EMTEECMVYD RYRDCMNGTL EEIISLCSSQ DHSVAFPMLQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-59 | 1 | 162 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-59 | 1 | 162 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-59 | 1 | 162 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-59 | 1 | 162 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-59 | 1 | 162 | 15 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-59 | 1 | 162 | 12 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-59 | 1 | 162 | 12 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj3g3v0938200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020203799.1 | 0.0 | NAC domain-containing protein 96 | ||||
Swissprot | Q9FFI5 | 1e-86 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A371GJV6 | 0.0 | A0A371GJV6_MUCPR; NAC domain-containing protein 45 (Fragment) | ||||
STRING | GLYMA15G41825.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-100 | NAC domain containing protein 20 |
Publications ? help Back to Top | |||
---|---|---|---|
|