PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0927080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 358aa    MW: 38961.8 Da    PI: 6.6027
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0927080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17186240256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  L+k+l+L  rqV vWFqNrRa+ k
  Lj3g3v0927080.1 186 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 240
                      778899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40186276192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Lj3g3v0927080.1 186 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 276
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-18161243IPR009057Homeodomain-like
SuperFamilySSF466896.42E-19171243IPR009057Homeodomain-like
PROSITE profilePS5007117.038182242IPR001356Homeobox domain
SMARTSM003896.7E-16184246IPR001356Homeobox domain
CDDcd000863.63E-15186243No hitNo description
PfamPF000464.8E-15186240IPR001356Homeobox domain
PROSITE patternPS000270217240IPR017970Homeobox, conserved site
PfamPF021831.6E-10242276IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.8E-25242285IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELGLRLGDS STSNLGEASN NQLDLGFNTT LSIGPITTSH KQEETKPKKD NNNNSQRNQD  60
HHEETSQANN NPVPQQLDLL PLLSFPWHPA SENGTLSAEL GGSGRTMNVL PAAAVVEDEA  120
EEGAALSSSP NSAASSFQMD LCMYSRGGSG GGGGGSFSGS GGKRDSDGEA YDEDENGGGG  180
GGNSTRKKLR LSKEQSAFLE ESFKEHHTLN PKQKLALSKQ LNLRPRQVEV WFQNRRARTK  240
LKQTEVDCEY LKRCCETLTE ENRRLHKELQ ELRALKKSNP FYMQLPATTL TMCPSCERVA  300
TNPTSNGTNN VNTNNNNPPA TANNTSNDSN SKAIGFPFGS KPRFLPFAHT SPQHLELN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190TRKKLRL
2234242RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.217880.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0927080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-58AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027915203.11e-130homeobox-leucine zipper protein HOX11-like
SwissprotA2YW038e-81HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A371EJ491e-131A0A371EJ49_MUCPR; Homeobox-leucine zipper protein HOX27
STRINGXP_007149086.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-72homeobox from Arabidopsis thaliana