PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0850590.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 452aa    MW: 51653.3 Da    PI: 5.257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0850590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-093454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C ++++ G C yG++C+F H+
  Lj3g3v0850590.1 34 ICAYYQK-GSCTYGSQCRFKHV 54
                     8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-4327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6426IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-42955IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9432956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53053IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-53353IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-73354IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.662127153IPR000571Zinc finger, CCCH-type
SMARTSM00356100127152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.6E-11186256IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.55E-12186260No hitNo description
CDDcd001621.74E-4192255No hitNo description
PROSITE profilePS5008912.106193254IPR001841Zinc finger, RING-type
PfamPF000971.1E-6193253IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.6E-6193253IPR001841Zinc finger, RING-type
PROSITE patternPS005180217226IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.045283311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155283312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MFNRGICKFY ARGRCLKGEQ CDYSHQRNDT PVDICAYYQK GSCTYGSQCR FKHVKASQAS  60
SSADRRQSLV SDSAAAHTTR GTSSSVRKAA NLSSYDKRAQ SLQHKHQESL GHGDVGESST  120
RTATATPSVH IFCPFAAADC PSRDKCPLIH GNQCSYCEKY CLHPTDREGK KNHLRTCEKK  180
EKYLQDLSKE VECNVCLERV LSKPKQSECK FGLLPECDHA FCLSCIRNWR NSASASGMDI  240
NNNANTVRTC PVCRKLSYFV IPSAIWFSTK EEKQEIIDNY KGKCKSVDCK HFNFGNGNCP  300
FGARCFYKHT VKQGSYTDIH RKPPPRHRPN NYDMYDVLDM LNEVDLQPEE YYSIMRDSEF  360
FDEMDACEMM ALSQSMGLYN SDEEDEYNFF QMAAFSEAMA SGVDDFGHED FENEEFNPME  420
AALFSMMMHS NMEEEEEDDD DDDDDESDEH FF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.85210.0cell culture| flower| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0850590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1372250.0BT137225.1 Lotus japonicus clone JCVI-FLLj-19D3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027340271.10.0E3 ubiquitin-protein ligase makorin-like
SwissprotE0X9N41e-101C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A371F0P80.0A0A371F0P8_MUCPR; Putative RING-type E3 ubiquitin transferase C3H69 (Fragment)
STRINGGLYMA15G42820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-102C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]