PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0850570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 318aa MW: 35468.1 Da PI: 7.3878 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Lj3g3v0850570.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 27.8 | 4.4e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G C yG+rC++ H+ Lj3g3v0850570.1 34 ICTYYQK-GVCAYGSRCRYDHV 54 7******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.108 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0092 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.11E-13 | 195 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.3E-10 | 199 | 265 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00342 | 205 | 265 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 206 | 264 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 3.4E-7 | 206 | 263 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.7E-7 | 206 | 263 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 230 | 239 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 11.347 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 19 | 293 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GVCAYGSRCR YDHVKASQAQ 60 SSAPSSSVVE HQPLVSGSFV FGNPRISSNG VAAAAESSLS KSPYIHTSKP AWNQESNYHD 120 LLGEDDVDVG QPITTLPSEL SICSFAAVGN CPRGEKCPHI HGDLCPTCGK HCLHPFRPEE 180 REEHIKSCED KQKHLEALKR SQEIECSVCL ERVLSKPTAA ERKFGLLSEC DHPFCISCIR 240 NWRNSNPTLG MDVNGTLRAC PICRKLSYFV VPSVIWYSTS EEKQEIVDTY KAKLKSIDCK 300 HFDFGDGNCP FGTSCFYK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.18229 | 0.0 | cell culture |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0850570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027340272.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X1 | ||||
Refseq | XP_027340276.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X3 | ||||
Swissprot | E0X9N4 | 1e-154 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1S2Z1G3 | 0.0 | A0A1S2Z1G3_CICAR; putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A371F8P9 | 0.0 | A0A371F8P9_MUCPR; Putative RING-type E3 ubiquitin transferase C3H69 (Fragment) | ||||
STRING | XP_004513288.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-142 | C3H family protein |
Publications ? help Back to Top | |||
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