PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0850570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 318aa    MW: 35468.1 Da    PI: 7.3878
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0850570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ffa  G C  G+ C F+H+
  Lj3g3v0850570.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                     99****6666.*************5 PP
2zf-CCCH27.84.4e-093454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C ++++ G C yG+rC++ H+
  Lj3g3v0850570.1 34 ICTYYQK-GVCAYGSRCRYDHV 54
                     7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5112956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108137164IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4142162IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.11E-13195270No hitNo description
Gene3DG3DSA:3.30.40.102.3E-10199265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00342205265No hitNo description
PROSITE profilePS5008912.238206264IPR001841Zinc finger, RING-type
SMARTSM001843.4E-7206263IPR001841Zinc finger, RING-type
PfamPF000971.7E-7206263IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010311.347293318IPR000571Zinc finger, CCCH-type
SMARTSM0035619293317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GVCAYGSRCR YDHVKASQAQ  60
SSAPSSSVVE HQPLVSGSFV FGNPRISSNG VAAAAESSLS KSPYIHTSKP AWNQESNYHD  120
LLGEDDVDVG QPITTLPSEL SICSFAAVGN CPRGEKCPHI HGDLCPTCGK HCLHPFRPEE  180
REEHIKSCED KQKHLEALKR SQEIECSVCL ERVLSKPTAA ERKFGLLSEC DHPFCISCIR  240
NWRNSNPTLG MDVNGTLRAC PICRKLSYFV VPSVIWYSTS EEKQEIVDTY KAKLKSIDCK  300
HFDFGDGNCP FGTSCFYK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.182290.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0850570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027340272.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_027340276.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X3
SwissprotE0X9N41e-154C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S2Z1G30.0A0A1S2Z1G3_CICAR; putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A371F8P90.0A0A371F8P9_MUCPR; Putative RING-type E3 ubiquitin transferase C3H69 (Fragment)
STRINGXP_004513288.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-142C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]