PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0839400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 39722.3 Da PI: 5.9937 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++ G g+W+ Iar g+ R++k+c++rw +yl Lj3g3v0839400.1 33 KGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 80 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 86 | 130 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+v+++ lG++ W+ Ia++++ gRt++++k++w++ Lj3g3v0839400.1 86 RGAFSPQEEDLIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 130 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-23 | 25 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.142 | 28 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-28 | 31 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 33 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-11 | 36 | 80 | No hit | No description |
PROSITE profile | PS51294 | 24.251 | 81 | 135 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 84 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-16 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-11 | 88 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MRKPDLVMAK DRVMNNNNNS SNNNNVVKSK LRKGLWSPEE DEKLLRYMIT KGQGCWSDIA 60 RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEDLIVHL HSILGNRWSQ IAARLPGRTD 120 NEIKNFWNST LKKRFKINNN LSTPSPNNSD SSEPRDHVSG GNNNIIMPNM NEQHDLMTMC 180 MDSSSSTSSS SMQSMRNMPP SMVLPDHQHF DPFFAMTSAP TGFPDLMSAA CFTQFGMVGD 240 DDGDGLHCDY GKMGLESDFS LPPLEISRSN NNIEVPINNN SNVKSHNNNN HFNNSCFNNT 300 DDQIQNSNIV VEDLFGFGNH NGQAGENLRM GEWDLEGLMQ DMSFFPSLDF QV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 31 | 134 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0839400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027343049.1 | 1e-145 | transcription factor MYB83 | ||||
TrEMBL | A0A0B2RG48 | 1e-141 | A0A0B2RG48_GLYSO; Transcription factor MYB46 | ||||
TrEMBL | I1N6I2 | 1e-141 | I1N6I2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G05080.1 | 1e-142 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 3e-70 | myb domain protein 83 |