PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0797480.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 315aa MW: 34973.2 Da PI: 8.414

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0797480.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.9	3.4e-16	245	293	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k +el+ Lj3g3v0797480.1 245 RRQKRMIKNRESAARSRARKQAYTTELENKVSRLEEENEKLRK-QKELET 293 79****************************************5.455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-11	241	297	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.645	243	288	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-15	245	291	No hit	No description
CDD	cd14707	2.14E-23	245	294	No hit	No description
SuperFamily	SSF57959	2.06E-11	245	290	No hit	No description
Pfam	PF00170	5.0E-14	245	288	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	248	263	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVSQSGADNN GKHSQLQPLV RQNSMYSLTL DEVQNQLGEP LSCMNLDELL KNVSNAEANQ 60 SIGMDNEDTA QAGQADARPR HASLPLTGAL SKKTVDEVWR DIQQSKDNNE KKSQERQPTL 120 GEMTLEDFLV KAGVVSEASS NRKNTGPLVG IDSNVAASQF PPPGPWIQYP QPQYLHPQQN 180 LIGIYMPGQS IPQPLHMGAG AQMDVPFVDG QVALPSPGTG ALSDTKKPGR KRSTPEDMVE 240 KTVERRQKRM IKNRESAARS RARKQAYTTE LENKVSRLEE ENEKLRKQKE LETMFSSAPP 300 PEPRYQIRRT SSALF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0797480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526362.1	1e-172	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_014632338.1	1e-172	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_028238370.1	1e-172	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_028238371.1	1e-172	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-86	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A371DZ62	1e-173	A0A371DZ62_MUCPR; ABSCISIC ACID-INSENSITIVE 5-like protein 2 (Fragment)
STRING	GLYMA06G47220.2	1e-172	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	6e-84	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]