PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0681710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 363aa    MW: 40759.6 Da    PI: 8.7709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0681710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g W+t ++  g++R++k+c++rw +yl
  Lj3g3v0681710.1 14 KGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.88.9e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
  Lj3g3v0681710.1  67 RGKFSLEEEEAIIQLHSVLGNK-WSTIAANLQ-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.025961IPR017930Myb domain
SuperFamilySSF466894.87E-3111108IPR009057Homeodomain-like
SMARTSM007173.3E-151363IPR001005SANT/Myb domain
PfamPF002494.3E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-251568IPR009057Homeodomain-like
CDDcd001673.65E-121661No hitNo description
PROSITE profilePS5129426.71862116IPR017930Myb domain
SMARTSM007173.5E-1566114IPR001005SANT/Myb domain
PfamPF002499.6E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2669116IPR009057Homeodomain-like
CDDcd001676.68E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAKSNSGEKN GVKKGPWTPE EDQKLVDYIQ KHGHGKWRTL PKNAGLKRCG KSCRLRWANY  60
LRPDIKRGKF SLEEEEAIIQ LHSVLGNKWS TIAANLQGRT DNEIKNYWNT HIKKKLLKMG  120
LDPVTHTPRL DVLQLASILN SSLYNNSAQF NNPGLFGMER VVNPSQLQLL NLVTTLLSCQ  180
NTNQDVWNTN NYQQNQLGGS TQWQHQTQCS QPMQLDNSIH AFQPNQVNEE NHCTTSNPLH  240
ILEPPQLMKT NLEHQISPIA SPFNHQNPMQ NLLQYNGGFT SNRKRPEPSS ATQSFSSLLC  300
NSEGMPNFNL SSLLSSTPSS SSPSTLNSSS STTFVKGTNE DERDTYGNMF MYNISNGLND  360
SGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0681710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0067080.0AP006708.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT09I23, TM0590c, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339923.11e-159transcription factor MYB41
SwissprotQ9LDR82e-89MY102_ARATH; Transcription factor MYB102
TrEMBLA0A445IB521e-151A0A445IB52_GLYSO; Transcription factor MYB102
TrEMBLK7M2E61e-151K7M2E6_SOYBN; Uncharacterized protein
STRINGGLYMA13G35810.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-88MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]