PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0463690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26797.3 Da PI: 9.7318 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.9e-18 | 178 | 232 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rkR +++keq Lee F+ +++++ +++ L k+l+L rq+ vWFqNrRa+ k Lj3g3v0463690.1 178 RKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTK 232 89***************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 80.6 | 2.5e-26 | 178 | 234 | 1 | 57 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktk 57 +k++rlskeq ++LEesF+ +++L+p++K +l ++L+l+prq++vWFqnrRARtk+k Lj3g3v0463690.1 178 RKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTKLK 234 5899***************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-17 | 163 | 228 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-17 | 168 | 232 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 174 | 234 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-10 | 176 | 234 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.64E-14 | 178 | 232 | No hit | No description |
Pfam | PF00046 | 3.4E-15 | 178 | 232 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLPSRQPPIL ISPNSLPLAT CIFCLCPVRK KVIMELGLSL GDNSRPFSFM EEPREASNQS 60 GLQFNTTLSI GPVITKQIDQ QQEQELLTVQ RNKHKSDSTT EDQNHEATNE SLLCPSLKAN 120 NKRDILPHFS SGGTSRGFDM NMPAEDEAEE EAALSSSPNM FRRKGRRSDE DENRGRTRKR 180 LRLSKEQFSF LEESFKDHNT LNPKQKIALG KQLHLHPRQI EVWFQNRRAR TKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0463690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009825 | 0.0 | AP009825.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT13N17, TM0436a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019451579.1 | 2e-57 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A1J7HWQ9 | 4e-56 | A0A1J7HWQ9_LUPAN; Uncharacterized protein | ||||
STRING | XP_007149086.1 | 3e-46 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-29 | homeobox from Arabidopsis thaliana |