PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0428880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 374aa    MW: 41617 Da    PI: 7.2068
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0428880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.4e-071374655
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                     +ft++++ e+e+  ++  n  p ++  + LA+k            ++ +qV +WFqN+R+  
  Lj3g3v0428880.1 13 RFTQNEVAEMEAILQEhnNAMPARDVLAVLAEKFsespdrkgkiTVQMKQVWNWFQNKRYAI 74
                     69*************666999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-10476IPR009057Homeodomain-like
SMARTSM003890.0012781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-71381IPR009057Homeodomain-like
PROSITE profilePS500719.4751377IPR001356Homeobox domain
CDDcd000867.06E-41375No hitNo description
PfamPF000461.9E-41374IPR001356Homeobox domain
PfamPF167192.7E-41129255IPR032001SAWADEE domain
CDDcd000240.00465142175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQNEVA EMEAILQEHN NAMPARDVLA VLAEKFSESP DRKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDDSAPVRN MSQPIAAPIL TGPGSVPTTA  120
KVTPENSVME FEAKSARDGA WYDVASFLSH RYLESSDPEV LVRFAGFGPE EDEWVNVRRN  180
VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DSQRRRHDVR GCRCRFLVRY  240
DHDQSEEIVP LRKVCRRPET DYRLQQLHAV SDSAHVDQQK SGMDAANVYT IRVTSSSETV  300
PKQQVTNIHQ LPTPVLQPNV SLAPQSMNVD PKKAETTDVQ PGNSTIVPGS VPFPSIVTTT  360
SAPEVPTQNM AEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461292594134SHH1 SAWADEE
4iur_B2e-461292594134SHH1 SAWADEE
4iut_A2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.30710.0cell culture| floral bud| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0428880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1343340.0BT134334.1 Lotus japonicus clone JCVI-FLLj-21B7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354197.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-145SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLG7LDQ20.0G7LDQ2_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAET030100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-134sequence-specific DNA binding transcription factors;sequence-specific DNA binding