PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0428760.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 459aa    MW: 49804.2 Da    PI: 6.8808
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0428760.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.42.6e-38471811119
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnss 86 
                      a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++        +        ++ss+  +++++
  Lj3g3v0428760.1  47 ATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELpawnpttaG--------TSSSQPPQNQQQ 132
                      589**************************************************************655544331........111111111111 PP

              TCP  87 sg.........................kaaksaakskksqksaasalnlakesrakar 119
                      ++                         +       ++++ +s++   +l +e  +  +
  Lj3g3v0428760.1 133 QNfsemlhrhspvddpviasgsrmvtgR------IPEQQFHSQQ---QLGNEDDEGGN 181
                      1123345566678888887663333330......3333333333...33333333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3448185IPR005333Transcription factor, TCP
PROSITE profilePS5136934.05550108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGETTQQDQT AAATTATNTP PASSRLAMRG SGGGEIVEVQ GGHIVRATGR KDRHSKVCTA  60
KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKTAIDELAE LPAWNPTTAG  120
TSSSQPPQNQ QQQNFSEMLH RHSPVDDPVI ASGSRMVTGR IPEQQFHSQQ QLGNEDDEGG  180
NNHNNTATKY KYTATAGSGF LPASLDNDIA DTIKSFFPVE TATTSFHSYP PPPDLLSRTA  240
SGGGSSQQDL RLSLQSFQDH HPIMFNHHHH QGHHEPVLFA GTPALSFDGG SSGGWPEQQQ  300
QQQNHHHQNH QQQQQQEEHE HGRLHRMVAW NVEAAEAANS GHGAGFMFSA PAPAIIPASV  360
FSHGHGQYFS QRGPLQSSNT PSIRAWIDPT SITAASLADH HHYHHYLTPA IHQASVSGAA  420
GFSASGAFSG FRIPARIQGE EEHDGVSDKP TSASSDSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2055108154Putative transcription factor PCF6
5zkt_B1e-2055108154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0428760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061460.0AP006146.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT34M22, TM0282, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510040.11e-171transcription factor TCP4-like
TrEMBLA0A1S2YUB31e-169A0A1S2YUB3_CICAR; transcription factor TCP4-like
STRINGXP_004510040.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-51TCP family protein