PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0409500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20427.2 Da    PI: 4.7693
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0409500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74e-201257449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ++   rqvtfskRr+g++KK +ELS++C++e+av++fs+ +k y y
  Lj3g3v0409500.1 12 KDPNTRQVTFSKRRTGLFKKTNELSIMCGTEIAVVVFSPGNKPYSY 57
                     56678***********************************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-26174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.488161IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-17323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRKKIKMEL VKDPNTRQVT FSKRRTGLFK KTNELSIMCG TEIAVVVFSP GNKPYSYGHP  60
SVDAVAAKYL QIEPNSDDDA QGGSTSNPTA DVSDMDQQNL ELADVMAQIR EEEKKAKVLA  120
ETLKEQQVTI RSEYQDLNDC YGELQGMVEK RLTEFEIAEL MVLLSEGKVE GMTVENKDEK  180
KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17175176MEF2 CHIMERA
6byy_B1e-17175176MEF2 CHIMERA
6byy_C1e-17175176MEF2 CHIMERA
6byy_D1e-17175176MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0409500.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.11e-65agamous-like MADS-box protein AGL29
TrEMBLA0A392M1B04e-66A0A392M1B0_9FABA; Agamous-like MADS-box protein AGL62-like
STRINGXP_004504539.14e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-35AGAMOUS-like 29