PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0397200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20832.6 Da PI: 7.8568 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140 | 7.9e-44 | 19 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++ Cv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da++s+vyeA+ar+r+PvyG+vg i++lqqq++ l+++ Lj3g3v0397200.1 19 PCAACKLLRRRCTAQsCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVRSMVYEANARVRNPVYGCVGAISSLQQQVDVLHTQ 112 7***********9766****************************************************************************** PP DUF260 94 lallkee 100 lal+++e Lj3g3v0397200.1 113 LALAQAE 119 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.151 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-43 | 19 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MQLEEMKKGG RKQGELPSPC AACKLLRRRC TAQSCVFAPY FPADEPQKFA NVHKVFGASN 60 VNKMLQELPE HQRGDAVRSM VYEANARVRN PVYGCVGAIS SLQQQVDVLH TQLALAQAEV 120 VHLRMHQVSS SRDDDQYKHV VHATSNSSSE NLSSPSRRLI MSSQSKSPFS IDMDIDQVEI 180 GESLWSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-46 | 18 | 121 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-46 | 18 | 121 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1344 | 0.0 | cell culture| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0397200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006366 | 0.0 | AP006366.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT35C03, TM0176a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019424969.1 | 1e-89 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-66 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A4P1QQH6 | 3e-88 | A0A4P1QQH6_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA08G17990.1 | 2e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-67 | LOB domain-containing protein 4 |