PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0392820.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 268aa    MW: 29372.6 Da    PI: 7.9626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0392820.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-11933226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     +++ C +++ t tCk+G++CkF H+
  Lj3g3v0392820.2  9 GEKDCAHYMLTRTCKFGESCKFDHP 33
                     7889********************8 PP
2zf-CCCH36.95.9e-126086127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+ff++t  Ck+G+rCkF+H++
  Lj3g3v0392820.2 60 PGEPDCPFFLKTQRCKFGSRCKFNHPK 86
                     5789*********************96 PP
3zf-CCCH37.25e-12101124427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C f++++G+Ck+G+ CkF+H++
  Lj3g3v0392820.2 101 PPCAFYMKSGQCKFGAACKFHHPK 124
                      89********************96 PP
4zf-CCCH39.68.7e-13178201326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C+f+++tG CkyG +C+++H+
  Lj3g3v0392820.2 178 EVDCPFYMKTGSCKYGTTCRYSHP 201
                      689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.263735IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034734IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5834IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8933IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-41332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2635987IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-65986IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-96186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-56485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-46584IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13197125IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-697124IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9101124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5102123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075175203IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7175202IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10178201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6179203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5181201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPMYPQRPGE KDCAHYMLTR TCKFGESCKF DHPIWVPEGG IPDWKEVPNI VTSETPPERP  60
GEPDCPFFLK TQRCKFGSRC KFNHPKVSSD VSGLPERPLE PPCAFYMKSG QCKFGAACKF  120
HHPKDIKIQL SDEPNLTVEQ TQTNPMLVGA TGDTQPVKPL ISPLLNNNSK GLPIRLGEVD  180
CPFYMKTGSC KYGTTCRYSH PDKNAVSPSI AALGSSVLAS SATNLNIGAL NPALSVYQAY  240
EPRLSNPTSQ VGIAGPIYPQ RPGQIECD
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0392820.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818002e-56LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132552e-56LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354792.11e-166zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-109C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A151QUM61e-164A0A151QUM6_CAJCA; Zinc finger CCCH domain-containing protein 37
STRINGGLYMA15G30265.11e-160(Glycine max)
STRINGXP_007133464.11e-160(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-107floral homeotic protein (HUA1)