PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0370510.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 325aa    MW: 34854.6 Da    PI: 6.1851
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0370510.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10230288563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l se+
  Lj3g3v0370510.2 230 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTTGLNSEN 288
                      9*********************************************9999888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15226290IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944228291IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-9230285No hitNo description
PfamPF001702.4E-9230288IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-11230282No hitNo description
CDDcd147032.08E-25231280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDKDKSVGHG GGLPPPPGRY SGYSPPGTAF NVKSEPPAGT SSYPQLVPGT SSDVNTHFGH  60
GMSTGAADSS GFSHDISRMP DNPPRNRGHR RAHSEILTLP DDISFDSDLG VVGGADGPSF  120
SDDTEEDLLS MYLDMDKFNS SSATSSFQMG EPSNAGGPSG SMPGQGFSAQ NIAVGGSERR  180
VRHQHSQSMD GSTSIKPEML VSGSDEMSGV DSKKAMSAAK LAELALIDPK RAKRIWANRQ  240
SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TTGLNSENSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK ILAGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.225150.0protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0370510.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341681.10.0probable transcription factor PosF21
SwissprotQ040881e-131POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1S2XBR60.0A0A1S2XBR6_CICAR; probable transcription factor PosF21
STRINGXP_004486898.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-145bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]