PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0312140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25941.2 Da PI: 4.4168 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.6e-39 | 52 | 152 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC + rrkC++dC+lapyfp++++++fan+h+lFG+++++k++++l++ +r+dam++++ye++arardPv G+ ++i+ l ++++q+++el Lj3g3v0312140.1 52 SCAACTHRRRKCSADCILAPYFPQDRRQQFANAHRLFGVATIIKIIQDLDPITRDDAMTAILYESDARARDPVGGCSRLIMILLSKIAQHQQEL 145 6********************************************************************************************* PP DUF260 95 allkeel 101 ++++++l Lj3g3v0312140.1 146 NVIRQQL 152 **99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.368 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-35 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MENDKDKTAT TSGTVNTPAN NDNTATTSRT PSTAANNDNT TTTSRTATNA RSCAACTHRR 60 RKCSADCILA PYFPQDRRQQ FANAHRLFGV ATIIKIIQDL DPITRDDAMT AILYESDARA 120 RDPVGGCSRL IMILLSKIAQ HQQELNVIRQ QLALRQMMMP QPQQNHPGFQ EEGNGDDERN 180 IPDLNKEDEN DDDDDDDDDD GEKHLPDLNE KDENDDDHDE KHLPDLNKEP K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 53 | 152 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 53 | 152 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0312140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015938723.1 | 8e-40 | LOB domain-containing protein 22 | ||||
Refseq | XP_016172519.1 | 8e-40 | LOB domain-containing protein 22 | ||||
Refseq | XP_025677486.1 | 8e-40 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A371EEG7 | 2e-38 | A0A371EEG7_MUCPR; LOB domain-containing protein 22 (Fragment) | ||||
STRING | Gorai.011G064500.1 | 6e-38 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-29 | LOB domain-containing protein 22 |