PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0247270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 641aa    MW: 71535.7 Da    PI: 7.1854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0247270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-171421556
                     HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Lj3g3v0247270.1  1 MEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 42
                     79************************************9877 PP
2START227.63.6e-711593804206
                      HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ++a++el+k+a+a+ep+W +s     e++n+de++++f+ +++      +s+ea+r++g+v+ +l++lv+++ld + qW+e+++    ka+t++
  Lj3g3v0247270.1 159 NQAMEELIKMATAGEPLWLRSFetgrEILNYDEYVKEFAAENSestgpkRSIEASRETGAVFVDLPRLVQSFLDAN-QWKEMFPclisKAATVD 251
                      689******************99***************999989********************************.***************** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                       i++g      ga+qlm+aelq+l+p+vp R+++fvRy++ql++++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh 
  Lj3g3v0247270.1 252 IICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSGEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHL 344
                      ***********************************************************98.9******************************* PP

                      E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++  +h ++r +v+sgla+ga++w atlq qce+
  Lj3g3v0247270.1 345 ECQKGAVHTMYRAIVNSGLAFGARHWIATLQLQCER 380
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000867.59E-14142No hitNo description
PROSITE profilePS5007116.115144IPR001356Homeobox domain
PfamPF000461.1E-14142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-15152IPR009057Homeodomain-like
SuperFamilySSF466898.77E-14149IPR009057Homeodomain-like
SMARTSM003892.2E-6148IPR001356Homeobox domain
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084839.183147383IPR002913START domain
SuperFamilySSF559619.06E-32149380No hitNo description
CDDcd088755.00E-112151379No hitNo description
SMARTSM002341.1E-70156380IPR002913START domain
PfamPF018524.9E-56158380IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4173192IPR023393START-like domain
Gene3DG3DSA:3.30.530.201.4E-4265375IPR023393START-like domain
SuperFamilySSF559611.09E-14402574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MEALFKESPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKTEIDKL  60
KEKNKSLREI INKACCPNCG VPTTSRDGAM PTEEQQLRIE NAKLKAEVEK LRGALEKYAP  120
GTTSPSCSSG HHDQENRSSL DFYTGIFGLD KSRIMDIVNQ AMEELIKMAT AGEPLWLRSF  180
ETGREILNYD EYVKEFAAEN SESTGPKRSI EASRETGAVF VDLPRLVQSF LDANQWKEMF  240
PCLISKAATV DIICNGEGSN RNGAVQLMFA ELQMLTPMVP TREVYFVRYC KQLSGEQWAI  300
VDVSIDKVED NIDASLVKCR KRPSGCIIED KSNGHCKVIW VEHLECQKGA VHTMYRAIVN  360
SGLAFGARHW IATLQLQCER LVFFMATNVP MKDSTGVATL AGRKSILKLA QRMTWGFCHA  420
VGASSFHTWT KVTSKNGEDI RISSRKNLND PSEPLGLILC AVSSVWLPVS HNVLFDFLRD  480
ETRRTEWDIM CSSASVQSIA NLAKGQDRGN AVTIQTIKSK ENSMWILQDS CTNSYESMVV  540
YAPVDITGMQ SVMTGCDSSN LAILPSGFSI VPDGLESRPL VITTRKEEKN TEGGSLFTIA  600
FQILTNASPT AKLTVESVDS VNTLVSCTLR NIRTSLQCED G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.16671e-117floral bud| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0247270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342448.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A151QT100.0A0A151QT10_CAJCA; Homeobox-leucine zipper protein GLABRA 2
STRINGXP_007150635.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]