PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0075780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 77aa MW: 9105.55 Da PI: 10.2984 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.2e-12 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt +Cr+f++ G C +G++C+FaHg Lj3g3v0075780.1 47 KKTQRCRRFQQHGMCGFGSKCNFAHG 72 59***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-11 | 41 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-4 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-9 | 46 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MSSYTNMMMM MMEPQEQPHF KKPKLALPPP PLNHHHHHHH HHHSSFKKTQ RCRRFQQHGM 60 CGFGSKCNFA HGIAELN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0075780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-06 | C3H family protein |