PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0012350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34322.6 Da PI: 8.5451 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 160 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +dp++++ tYegeHnh+ Lj3g3v0012350.1 160 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVDDPSILVATYEGEHNHP 219 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.7E-29 | 158 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-25 | 159 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.142 | 159 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-35 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 161 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDCSSWINTS LDLNINSHRV YEDVLQKKEV ENNFFSLGLR KSSVKEESNG ALVEELKRVS 60 AENKKLTEML TEMCENYNTL RSNLTEYMRN NPDNKEVIST SKKRKSESSN NNSNPLGVNG 120 NSESSSTDEE TCKKPREETI KAKVSKVYHR TEPSDISLIV KDGYQWRKYG QKVTRDNPSP 180 RAYFKCSFAP TCPVKKKVQR SVDDPSILVA TYEGEHNHPI SSQMEATSGS NRCMTTVSVP 240 CSAPTVTLDW TKSKSSCKES KNMNPKIHSP EVPQILVEHM ASSLTNDPNF RAALVAAISG 300 QMLPKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-20 | 159 | 220 | 16 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 5e-20 | 159 | 220 | 16 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.12561 | 0.0 | cell culture| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0012350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145487 | 0.0 | BT145487.1 Lotus japonicus clone JCVI-FLLj-3C17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027340389.1 | 1e-167 | probable WRKY transcription factor 40 isoform X2 | ||||
Swissprot | Q9SAH7 | 4e-96 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | I3SYD9 | 0.0 | I3SYD9_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA13G44730.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-91 | WRKY DNA-binding protein 40 |