PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3413360.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 777aa MW: 90017.8 Da PI: 6.4829

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3413360.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.4e-31	69	160	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel+p Lj2g3v3413360.1 69 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 160 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-30	69	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-32	281	373	IPR018289	MULE transposase domain
Pfam	PF04434	5.3E-12	549	595	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.276	561	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-9	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MDNDFDIGLG VYDDDEHEHP IDEEEVEEEL VPTGTGGDGE LIYFPEGDLL DLEPYEGMEF 60 ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL NEKRTKDREI 120 KRPRTITRVG CKASLSVKMQ DSGKWIVSGF VREHNHELVP PDQVHSLRSH RQISGAAKTL 180 IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD IQLVLDYLRQ 240 LHAENPNFFY AVQGDEDPSR SNIFWSDPKA KMNYTFFGDT VTFDTTYRSN RYRLPFAPFT 300 GVNHHGQPVL FGCAFIINES EASFVWLFNT WLMAMSGRPP VSITTDHDSI IRSAIMQVFP 360 ETRHRFCKWH IFKKCQEKLS HVFLKYPNFE AEFHKCVNLT ESTEEFESCW LTLIDRYDLR 420 DHEWLQALYS SCRQWAPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN LNQFFKLYEK 480 ALESRNEKEV RADYDTMNTL PVLRTPSPME KQASELYTRK IFMRFQEELV GTLTFMASKA 540 DDDGEVITYH VAKFGEDHKA YYVKFNVLEM KASCSCQMFE FSGLLCRHIL AVFRVTNVLT 600 LPSHYILKRW TRNAKSNVIL EEHSCDVHTY YLESHTVRYN TLRHEAFKFV DKGARSPETY 660 DVAMDGLQQA AKRVAQVVQN EGRIPISIGK ARSLMLNDKS HADYTSGHQE ESLGQDMSQD 720 DMDKHIKKLM NELECAIRKC EIYRSNLLSA LKAVEDHKLE LSIKVENIKI NMKEGIW

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MDNDFDIGLG VYDDDEHEHP IDEEEVEEEL VPTGTGGDGE LIYFPEGDLL DLEPYEGMEF  60
ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL NEKRTKDREI  120
KRPRTITRVG CKASLSVKMQ DSGKWIVSGF VREHNHELVP PDQVHSLRSH RQISGAAKTL  180
IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD IQLVLDYLRQ  240
LHAENPNFFY AVQGDEDPSR SNIFWSDPKA KMNYTFFGDT VTFDTTYRSN RYRLPFAPFT  300
GVNHHGQPVL FGCAFIINES EASFVWLFNT WLMAMSGRPP VSITTDHDSI IRSAIMQVFP  360
ETRHRFCKWH IFKKCQEKLS HVFLKYPNFE AEFHKCVNLT ESTEEFESCW LTLIDRYDLR  420
DHEWLQALYS SCRQWAPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN LNQFFKLYEK  480
ALESRNEKEV RADYDTMNTL PVLRTPSPME KQASELYTRK IFMRFQEELV GTLTFMASKA  540
DDDGEVITYH VAKFGEDHKA YYVKFNVLEM KASCSCQMFE FSGLLCRHIL AVFRVTNVLT  600
LPSHYILKRW TRNAKSNVIL EEHSCDVHTY YLESHTVRYN TLRHEAFKFV DKGARSPETY  660
DVAMDGLQQA AKRVAQVVQN EGRIPISIGK ARSLMLNDKS HADYTSGHQE ESLGQDMSQD  720
DMDKHIKKLM NELECAIRKC EIYRSNLLSA LKAVEDHKLE LSIKVENIKI NMKEGIW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3413360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006686	0.0	AP006686.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT18K09, TM0380, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029125389.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A371H944	0.0	A0A371H944_MUCPR; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRING	XP_007142582.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]