PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj2g3v3338910.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 492aa MW: 53585.8 Da PI: 6.6595 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.3 | 2.4e-26 | 110 | 166 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++ + ++++++ + g+Hnh+ Lj2g3v3338910.2 110 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPSCQAKKQLQQLN-NGQITDSICIGQHNHP 166 7***************************************9.***************8 PP | |||||||
2 | WRKY | 97.5 | 8.7e-31 | 282 | 340 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYGqK v+g+++prsYYrC+ +gC +kk+ver+++d k+v++tYeg+H he Lj2g3v3338910.2 282 VDDGYRWRKYGQKLVRGNTNPRSYYRCSNPGCFAKKHVERASHDSKIVITTYEGHHCHE 340 59*******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-23 | 103 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.084 | 104 | 168 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-22 | 105 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-27 | 109 | 167 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-21 | 110 | 166 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.3E-32 | 272 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 274 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.247 | 277 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-35 | 282 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-24 | 283 | 339 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence Send to blast |
MVSSDGSVDH KASSDEAQQR ASPHGDVTLS EQGICDTEIH LSKPEGARST LSIVAENAGK 60 DSDSTACALQ SGQEGSPSPL EKHLHSPDTS LHESQSGQHS PAIVREKVTK DGYNWRKYGQ 120 KHVKGNEFIR SYYKCTHPSC QAKKQLQQLN NGQITDSICI GQHNHPRPQL DTAQPVHSVL 180 PVAEQGPQKP SLTNVEDKSS VEHGCQPLEV KPLHSLPASK VSPADDLKAT HLQLKVKDEA 240 HSNEDSASKR LKKENGNAAA AGVDLPTRGP RVVHTSSEVD FVDDGYRWRK YGQKLVRGNT 300 NPRSYYRCSN PGCFAKKHVE RASHDSKIVI TTYEGHHCHE IPSARSVTTH NSAIDTHAMA 360 TNGKSGTKYE GSIVRVDSGS KSRLDEQQNE EPITSKSKVG DTVEFCAVSL SNEGHETKLK 420 EQEQQNDDSG AKDDSVSSDI ICHSSSEGPC RTNEQLKDEV KTTSEGSKDC LNVVAVDVHN 480 QQPKSDPEPV QS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-29 | 273 | 343 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-29 | 273 | 343 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj2g3v3338910.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234360.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_028200408.1 | 0.0 | WRKY transcription factor 1-like | ||||
TrEMBL | A0A0B2SJM8 | 0.0 | A0A0B2SJM8_GLYSO; WRKY transcription factor 1 | ||||
STRING | GLYMA02G47650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-76 | zinc-dependent activator protein-1 |