PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3338900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 542aa    MW: 60836.7 Da    PI: 6.2913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3338900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.21.7e-1381725421374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++ L++cA+a++++dl + q+l+ +l++++s +g+p+qRl ay++e+L arl+ s+s++ykal+++e +   sse l+++++++ev+P++kf+
  Lj2g3v3338900.1 172 LKHILIACAKAIADNDLLMGQWLMDELRQMVSVSGEPVQRLGAYMLEGLVARLSASGSSIYKALRCKEPE---SSELLSYMHILYEVCPYFKFG 262
                      6899*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+A++++vpfef++ +a + 
  Lj2g3v3338900.1 263 YMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGKRLSKLAQHFKVPFEFHA-AAISG 355
                      *******************************************************998899999************************.88899 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++l++L v++gEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+leyy+a+f+s++++lpre++
  Lj2g3v3338900.1 356 CDVQLHNLGVRQGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLEYYTAMFESIDVTLPREHK 449
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ e++g+l+lgW++r Lv+ +aW+
  Lj2g3v3338900.1 450 ERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLVERDGALYLGWMNRDLVASCAWK 542
                      *****************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.072146523IPR005202Transcription factor GRAS
PfamPF035145.8E-136172542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQASEQHRSS SMYHQQLQQI EAYNLPQYRT LNHQLYYNDG GQFSTPSSSE LYCTLESSSA  60
TGSFTVYNSP STVSFSPNGS PISQQDSQSY SYPPEQYHSP DNNYGSPMSG SCITDDVSSF  120
KHKLRELESV MLGPDSDNID SYDSAISNAT NFVSLEMDSW RQTMVAISTK NLKHILIACA  180
KAIADNDLLM GQWLMDELRQ MVSVSGEPVQ RLGAYMLEGL VARLSASGSS IYKALRCKEP  240
ESSELLSYMH ILYEVCPYFK FGYMSANGAI AEAMKDEDRV HIIDFQIAQG SQWITLIQAF  300
AARPGGPPHI RITGIDDSTS AYARGGGLHI VGKRLSKLAQ HFKVPFEFHA AAISGCDVQL  360
HNLGVRQGEA LAVNFAFMLH HMPDESVSTQ NHRDRLLRLV KSLSPKVVTL VEQESNTNTA  420
AFFPRFLETL EYYTAMFESI DVTLPREHKE RINVEQHCLA RDLVNIIACE GVERVERHEV  480
LGKWRSRFAM AGFTPYPLSS LVNGTIKKLL ENYSDRYRLV ERDGALYLGW MNRDLVASCA  540
WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6217954125377Protein SCARECROW
5b3h_D3e-6217954125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3338900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142502.10.0hypothetical protein PHAVU_008G286000g
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLV7BDE60.0V7BDE6_PHAVU; Uncharacterized protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]