PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3246890.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 455aa    MW: 51083.6 Da    PI: 4.4879
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3246890.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.46.5e-941724532279
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +e L +cA+a++ +d e +++l+++l+e++s +gdp+qRl ay++eAL ar+a+s+s++ykal+++e s    se l+++++++e++P+lkf++
  Lj2g3v3246890.1 172 KEMLCTCAKAMERNDVETTEWLMSELREMVSVTGDPIQRLGAYMLEALVARIASSGSTIYKALKCKEPS---GSELLSYMHVLYEICPYLKFGY 262
                      789*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN  I ea++ e++vHiiDf+i+qG+QW +L+qaLa+Rp+gpp++RiTgv++++s   +   l  +gerL+k+A++++vpfef++ + ++ +
  Lj2g3v3246890.1 263 MSANGVIAEALNDESKVHIIDFQINQGIQWQSLIQALAERPGGPPKIRITGVDDSTSAyaRGGGLDIIGERLNKIAKSCNVPFEFHA-IGTSPS 355
                      ******************************************************998899999************************.6999** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      +++l++L+++p+Ea+aVn++++lh+++desv++++      +r+++L+l k lsPkvv++veqe+++n+ +Fl rf+e+++yy  +f+s++a  
  Lj2g3v3246890.1 356 EVQLQDLEIRPEEAIAVNFAMMLHHVPDESVDTQNqgwsqnHRNRLLRLAKCLSPKVVTLVEQESNTNNLPFLPRFVETMNYYLGVFESIDAAP 449
                      *******************************99988888889************************************************9998 PP

             GRAS 276 pres 279
                      pre+
  Lj2g3v3246890.1 450 PREH 453
                      8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.232145455IPR005202Transcription factor GRAS
PfamPF035142.2E-91172453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQTSLKHKMP YGSSRFSIEP EQNLESFFFL PNENLDNYSS SGNSVLFYDL EQYWTPESSI  60
NNSFPGQNSP STVIFSPENS PVSKLNSKSD VLRSEHSLEI INDSLENDSC VTHNHNELSL  120
KIRELEIAML GHDADVLDIY DSVIPEEYDS SFMLEAENLK TMMEMVARGD LKEMLCTCAK  180
AMERNDVETT EWLMSELREM VSVTGDPIQR LGAYMLEALV ARIASSGSTI YKALKCKEPS  240
GSELLSYMHV LYEICPYLKF GYMSANGVIA EALNDESKVH IIDFQINQGI QWQSLIQALA  300
ERPGGPPKIR ITGVDDSTSA YARGGGLDII GERLNKIAKS CNVPFEFHAI GTSPSEVQLQ  360
DLEIRPEEAI AVNFAMMLHH VPDESVDTQN QGWSQNHRNR LLRLAKCLSP KVVTLVEQES  420
NTNNLPFLPR FVETMNYYLG VFESIDAAPP REHST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-461754528276GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.179350.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3246890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1362991e-153BT136299.1 Lotus japonicus clone JCVI-FLLj-21E13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027330551.10.0scarecrow-like protein 21
RefseqXP_027330552.10.0scarecrow-like protein 21
RefseqXP_027330553.10.0scarecrow-like protein 21
RefseqXP_027330554.10.0scarecrow-like protein 21
RefseqXP_027330555.10.0scarecrow-like protein 21
SwissprotQ8H1251e-143SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL71e-144PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A445H0420.0A0A445H042_GLYSO; Scarecrow-like protein 5
STRINGGLYMA14G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-146GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]