PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3246860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 581aa MW: 62985.6 Da PI: 7.219 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.1e-32 | 222 | 279 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Lj2g3v3246860.1 222 NDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 279 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.2 | 1.7e-33 | 396 | 454 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Lj2g3v3246860.1 396 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 454 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.088 | 216 | 280 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-27 | 217 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 218 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-33 | 221 | 279 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-25 | 222 | 278 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-37 | 381 | 456 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-29 | 388 | 456 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 391 | 456 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 396 | 455 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-26 | 397 | 454 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MDATAATTSS GETDDPNRTG SGQNSNSTAR YKLFSPAKLP ISRSPCITIP PGLSPSSFLE 60 SPVLLSNMKV EPSPTTGSFA KLFQTVHGST ASNASVTFPV TTVCFNTSAV DEGKSSFFEF 120 KPHNRSNMPP ADFNNHVNEQ PTHVEGPGKA QPLTTSPLVE SELAVLSNEL SLSSPGQMVS 180 SGASAPVDFN SDEFNHKCTG LQTSHADVRG SGLLVAAEKV TNDGYNWRKY GQKLVKGSEF 240 PRSYYKCTHP NCEVKKLFER SHDGQITEIV YKGTHDHPKP QPSSRSSAGS IMSMQGERSD 300 MTSSAGRDDK ASNVYGHVSH EAEPNSTPEL SPVATNDDSQ ECAGFVSNRT NEEVDDDDPF 360 PKRRKMELGN VDIIPIVKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY 420 KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHDVPAARN SSHDMVGHVA AGGNTRIKLE 480 QSDTISLDLG MGITTSAAEN RSNGQGKMVL SEFGHSQNTH PSTSNFKFVH TSPAPGYYGV 540 LNNSSSSYGS RENRSDGPSL NHSSYPCSQN MGRLLMGPRN C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-37 | 211 | 457 | 6 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-37 | 211 | 457 | 6 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22480 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3246860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519618.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_028221428.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A445LW23 | 0.0 | A0A445LW23_GLYSO; Putative WRKY transcription factor 20 isoform A | ||||
TrEMBL | I1JJG7 | 0.0 | I1JJG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G46690.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-175 | WRKY family protein |