PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3245800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 179aa MW: 20903.4 Da PI: 9.6182 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 183.4 | 1.6e-56 | 2 | 179 | 78 | 253 |
GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 l+a+k++ +sP+ ++++++aN++Il+ v++ + vHiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rLak++ Lj2g3v3245800.1 2 LKAYKVYITASPFWRMTNFLANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQPGfrPTERVEETGWRLAKYC 95 689************************************************************************9****************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 +++gvpfe+n+ +a+++e+++le+L+++ +E+++Vn+ ++l++l de+v+++ +rd+vLkl+++++P+++++ + +n++ F Lj2g3v3245800.1 96 KRFGVPFEYNF-LAQKWETIRLEDLKIDMeEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKLIRRVNPNIFIHGVINGTYNAPFF 179 ***********.6**************9989999**************************************9999999988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.384 | 1 | 179 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-54 | 2 | 179 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MLKAYKVYIT ASPFWRMTNF LANRTILKLV QNVSSVHIID FGIFYGFQWP CLIQRLSERP 60 GGPPKLRITG IDLPQPGFRP TERVEETGWR LAKYCKRFGV PFEYNFLAQK WETIRLEDLK 120 IDMEEEVTVV NCLYRLKNLS DETVTVNCPR DAVLKLIRRV NPNIFIHGVI NGTYNAPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-23 | 1 | 146 | 95 | 248 | Protein SCARECROW |
5b3h_A | 7e-23 | 1 | 146 | 94 | 247 | Protein SCARECROW |
5b3h_D | 7e-23 | 1 | 146 | 94 | 247 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.16284 | 0.0 | pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3245800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507177.1 | 1e-111 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 5e-78 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1S2YMW0 | 1e-110 | A0A1S2YMW0_CICAR; scarecrow-like protein 30 | ||||
STRING | XP_004507177.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 2e-80 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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