PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3069800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 877aa    MW: 96973.4 Da    PI: 6.4421
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3069800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23129230199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Lj2g3v3069800.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLNDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 218
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Lj2g3v3069800.1 219 EKNQLLLGIRRA 230
                      99999****997 PP
2Auxin_resp1193.9e-39255338183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr+ Gt++g+sdld+vrWpnS+Wrs+k
  Lj2g3v3069800.1 255 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYVGTITGISDLDSVRWPNSHWRSVK 338
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-22128229No hitNo description
SMARTSM010193.9E-24129231IPR003340B3 DNA binding domain
PfamPF023629.8E-22129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
PfamPF065076.1E-34255338IPR010525Auxin response factor
PfamPF023091.6E-8729825IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-8734818No hitNo description
PROSITE profilePS5174523.473741827IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MKLSSSGLDQ QLEEEGEKKC LNSELWHACA GPLVSLPPIG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP NLPPQLICQL HNETMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLNDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRSQTIMPSS  240
VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYVGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSS FPLRLRRPWL SGPPSLYGLK DGDMSISSPL LWLQGGLGDQ GMQSLNFQGL  420
GVTPWVQPRL DASTPGLHPE LYQAMTSAAF QEMRTMNPSK SSSQSMQFQQ ATNVPSDHAS  480
QVQRPVLSQS QPQNTFVHNF QENQVPTQSQ LLQQQLHRYH PYSDQRQQQQ LKNLPVQQQL  540
QNVISPLSNL SSGTQSHSPP MQALASHCQQ QSFPNPIRNH ISSSDVSTFQ SLLGSFSQDG  600
TSQFLNLNGS NSVPTAAANC VLPQVVNMGT SQSNVSELSA LPPFPGREHS AYQGAADPQS  660
NLPFGINVDP SSLMLQNGMQ NLRNIGNVND SLSLPFSASN CDGVTGTDFP LSSNIAASSC  720
VDESGFLQSS ENVDQANTPT GTFVKVHKSG SFGRSLDISK FSSYDELRSE LARMFGLEGQ  780
LEDPMTLRSG WQLVFVDREN DILLLGDDPW QEFVNNVSYI KILSPLEVQE MGRSVATSTS  840
SPGHKLSNNG NSCDDYASRQ ELRSSRNGVA PMGSFHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621335942388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.42180.0floral bud| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3069800.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429847.10.0PREDICTED: auxin response factor 6-like isoform X1
RefseqXP_017429848.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLV7B6L00.0V7B6L0_PHAVU; Auxin response factor
STRINGXP_007141460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]