PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2877220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 138aa MW: 15363.1 Da PI: 8.4716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.2e-11 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ Lj2g3v2877220.1 50 PGEPDCLYYLRTGMCGYGSNCRYNHP 75 5789*********************9 PP | |||||||
2 | zf-CCCH | 33.6 | 6.7e-11 | 99 | 118 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tGtCkyG++Ck++H++ Lj2g3v2877220.1 99 YFLKTGTCKYGSTCKYHHPK 118 8*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.164 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-8 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.071 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.544 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 99 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 99 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MPENRHVSRN AAASNPPADN NIEEAIRRLK INGNRDRDAV AQSTPYPDRP GEPDCLYYLR 60 TGMCGYGSNC RYNHPTHISL ATQLGEELPE RAGQPEGEYF LKTGTCKYGS TCKYHHPKDR 120 RGAAPVSFNT LGLPMRQG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25355 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2877220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332023.1 | 2e-77 | zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
Swissprot | Q94AD9 | 1e-49 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A1S2XLE0 | 2e-75 | A0A1S2XLE0_CICAR; zinc finger CCCH domain-containing protein 3 | ||||
STRING | XP_004491091.1 | 4e-76 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-50 | C3H family protein |
Publications ? help Back to Top | |||
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