PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2877210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 263aa    MW: 28220.8 Da    PI: 7.9852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2877210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-091181027
                     GGTS--TTTTT-SS-SSS CS
          zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                     +rtG Ck+G+ CkF+H++
  Lj2g3v2877210.1  1 MRTGSCKFGAACKFHHPQ 18
                     8***************97 PP
2zf-CCCH40.83.7e-13130155227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C++f+ tGtCkyG+ CkF+H++
  Lj2g3v2877210.1 130 DQPECKYFMSTGTCKYGSDCKFHHPK 155
                      689*********************96 PP
3zf-CCCH35.41.8e-11172197126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C++++ +G+Ck+G++CkF H+
  Lj2g3v2877210.1 172 PGQAICSYYRIYGICKFGPTCKFDHP 197
                      5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035637118IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-7118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.282119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586128156IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6128155IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-11130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-6134155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5169197IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6171198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629171199IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4176196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRTGSCKFGA ACKFHHPQQH ASFGAYSLAG SPTSTIIPAS SLPYVGAFPA WSVPRMSYLS  60
GQGLQSYLPP YLSSSQGIVP AQSWNTYMGS MNPAMPSSFP GSNLVYEYMN PGESLSGGQA  120
LSSTLPDRPD QPECKYFMST GTCKYGSDCK FHHPKERVAQ SLINPLGLPV RPGQAICSYY  180
RIYGICKFGP TCKFDHPVVA IPQNYGMTSP SLSVLDASSL MSNPRGFSST VQLTETSPPK  240
LSSDKLQQNS DAKAEAAAEE DSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.70090.0floral bud| flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2877210.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332022.11e-150zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_027332023.11e-150zinc finger CCCH domain-containing protein 3 isoform X2
RefseqXP_027332024.11e-150zinc finger CCCH domain-containing protein 3 isoform X3
TrEMBLA0A371E1H71e-147A0A371E1H7_MUCPR; Zinc finger CCCH domain-containing protein 3
STRINGXP_004491091.11e-141(Cicer arietinum)
STRINGXP_007141660.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-44C3H family protein