PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2843700.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 17812.4 Da PI: 8.3429 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.9 | 1.1e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+++l ael Lj2g3v2843700.2 14 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANERLRDPVYGSMGAISSLQQQVQSLIAEL 107 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Lj2g3v2843700.2 108 NAVRSE 113 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.246 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-40 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MFGPQAGTLN TTSPCAACKL LRRRCAQECP FSPYFSPHEP HKFASVHKVF GASNVSKMLM 60 EVPESQRADA ANSLVYEANE RLRDPVYGSM GAISSLQQQV QSLIAELNAV RSEILRHKLR 120 EVNMIHSSHV LVPSSEVISI AAQPPPTLPM PPLPTASSSI YTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 8 | 125 | 5 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 8 | 125 | 5 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2843700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006865 | 1e-173 | AP006865.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT37H21, TM1032, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213611.1 | 4e-81 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 1e-66 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A151TQY9 | 3e-80 | A0A151TQY9_CAJCA; LOB domain-containing protein 15 | ||||
STRING | AES99716 | 4e-80 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-66 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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