PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2843700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 18926.6 Da PI: 8.6393 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.6e-38 | 14 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+++l ael Lj2g3v2843700.1 14 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMV-PESQRADAANSLVYEANERLRDPVYGSMGAISSLQQQVQSLIAEL 106 7********************************************986.********************************************* PP DUF260 95 allkee 100 +++++e Lj2g3v2843700.1 107 NAVRSE 112 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 13 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-38 | 14 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MFGPQAGTLN TTSPCAACKL LRRRCAQECP FSPYFSPHEP HKFASVHKVF GASNVSKMLM 60 VPESQRADAA NSLVYEANER LRDPVYGSMG AISSLQQQVQ SLIAELNAVR SEILRHKLRE 120 VNMIHSSHVL VPSSEVISIA AQPPPTLPMP PLPTASSSIY TQQSTSSNYS TISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 8 | 124 | 5 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 8 | 124 | 5 | 122 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2843700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006865 | 0.0 | AP006865.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT37H21, TM1032, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616758.1 | 4e-82 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 4e-64 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | G7KH28 | 8e-81 | G7KH28_MEDTR; LOB domain protein | ||||
STRING | AES99716 | 1e-81 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-63 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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