PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2827780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18604 Da PI: 4.8734 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134 | 6e-42 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+Ca+dC+++pyfp+++p+kfa+vhk+FGasn + +l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +l Lj2g3v2827780.1 8 PCASCKLLRRRCAQDCIFSPYFPSDDPQKFAIVHKVFGASNNSTMLQELPFDQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Lj2g3v2827780.1 102 AVAQAE 107 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.926 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-41 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MGGSGNSPCA SCKLLRRRCA QDCIFSPYFP SDDPQKFAIV HKVFGASNNS TMLQELPFDQ 60 RADAVSSLVY EAHARVRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEILC IQMQNEPVMP 120 NPELDLDQKS YLLQNDLPQY LNYTSSSNVI HHDSLSRESI FGHDMVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2827780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028195629.1 | 1e-101 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-74 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0B2PB86 | 1e-100 | A0A0B2PB86_GLYSO; LOB domain-containing protein 12 | ||||
STRING | GLYMA18G02780.1 | 2e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-77 | LBD family protein |
Publications ? help Back to Top | |||
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