PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v2807730.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 168aa MW: 18796.3 Da PI: 5.5928

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v2807730.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	8.2e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +l Lj2g3v2807730.1 8 PCASCKLLRRRCTKDCTFAPYFPADEPQKFAIVHKVFGASNVSKMLQEIPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Lj2g3v2807730.1 102 AVAQTE 107 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.398	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-44	8	105	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:2.105.10.10	5.5E-4	87	150	IPR015948	Bacteriophage PRD1, P2, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGGTGNSPCA SCKLLRRRCT KDCTFAPYFP ADEPQKFAIV HKVFGASNVS KMLQEIPVHQ 60 RADAVSSLVY EANARVRDPV YGCVGAISYL QNQVSELQMQ LAVAQTEILC IQMQQHEPVV 120 PTPEVNNPDQ KPYFLQDEFS QYLNFGSSSN VIYDSLQREN IYGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	5	109	8	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	5	109	8	112	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v2807730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019461103.1	1e-104	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A4P1R6H4	1e-102	A0A4P1R6H4_LUPAN; Uncharacterized protein
STRING	AES99648	2e-98	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-75	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]