PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2794420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20456.2 Da PI: 7.0599 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.9e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear++dPvyG++g i lq+++ +l+++l Lj2g3v2794420.1 11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLKDPVYGCIGAIAMLQRKMVELQHDL 104 6********************************************************************************************* PP DUF260 95 allkee 100 a +k++ Lj2g3v2794420.1 105 AIAKDR 110 999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.407 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLK DPVYGCIGAI AMLQRKMVEL QHDLAIAKDR LAHAAATAAA 120 TTTATTTTTT AFSGDILNSH VSLPPFPEFS TCCDFNDNFS HNSSSQSWRT HETVDDFIQI 180 PYIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-46 | 6 | 129 | 6 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-46 | 6 | 129 | 6 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2794420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY790249 | 0.0 | AY790249.1 Lotus corniculatus var. japonicus lateral organ boundaries-like 1 (LOB1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429806.1 | 1e-102 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | Q4VPE9 | 1e-125 | Q4VPE9_LOTJA; Lateral organ boundaries-like 1 (Fragment) | ||||
STRING | AES99630 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-64 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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