PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2771150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 260aa    MW: 29203.1 Da    PI: 7.6374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2771150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-182065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ede l ++v q+G+++W+ I++ ++ gR++k+c++rw + 
  Lj2g3v2771150.1 20 KGSWSPQEDETLMKLVGQHGPRNWSVISAGIP-GRSGKSCRLRWCNQ 65
                     799*****************************.***********985 PP
2Myb_DNA-binding543.9e-1774116347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed ++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
  Lj2g3v2771150.1  74 PFTPTEDTIIIQAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 116
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7481570IPR017930Myb domain
SuperFamilySSF466895.08E-3017113IPR009057Homeodomain-like
SMARTSM007172.2E-141968IPR001005SANT/Myb domain
PfamPF002491.4E-172065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-242173IPR009057Homeodomain-like
CDDcd001676.91E-132264No hitNo description
PROSITE profilePS5129421.11471121IPR017930Myb domain
SMARTSM007174.6E-1471119IPR001005SANT/Myb domain
CDDcd001671.15E-1074117No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2374120IPR009057Homeodomain-like
PfamPF002491.9E-1474116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MIGGGDSSNG GGGGDRDRVK GSWSPQEDET LMKLVGQHGP RNWSVISAGI PGRSGKSCRL  60
RWCNQLSPDV QHRPFTPTED TIIIQAHAVH GNKWATISRL LPGRTDNAIK NHWNSTLRRR  120
RGESLPLPLA SPSPSPSPSP PLPFSMAKRP HGYELLDRYD GLMDQGYPFK RHCVEKDDEE  180
SRDGVEEAET MTEEEVLASS VPTSLSLFPM GEKKMVAVAE KEEKKMDMQE GLMRTMMQRM  240
IAEEVRAYFD KMRFDPRLQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38191203104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2771150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044670.0AP004467.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT06K11, TM0002, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491024.11e-86transcription factor MYB44-like
TrEMBLA0A392NFN63e-89A0A392NFN6_9FABA; Transcription factor MYB44-like (Fragment)
STRINGXP_004491024.14e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-53myb domain protein r1