PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2688010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 402aa    MW: 43393.5 Da    PI: 5.4488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2688010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-1860105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+W++eEd  l ++v+q+G ++W+ Iar ++ gR++k+c++rw + 
  Lj2g3v2688010.1  60 RGPWSPEEDTVLSQLVAQFGARNWSMIARGIP-GRSGKSCRLRWCNQ 105
                      89******************************.***********985 PP
2Myb_DNA-binding58.91.1e-18112156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd l++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Lj2g3v2688010.1 112 RKPFTEEEDRLIISAHAIHGNR-WAAIARLLP-GRTDNAIKNHWNST 156
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.57155106IPR017930Myb domain
SuperFamilySSF466892.48E-3157153IPR009057Homeodomain-like
SMARTSM007172.0E-1459108IPR001005SANT/Myb domain
PfamPF002493.6E-1660105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2661113IPR009057Homeodomain-like
CDDcd001673.99E-1462104No hitNo description
PROSITE profilePS5129426.661107161IPR017930Myb domain
SMARTSM007171.9E-18111159IPR001005SANT/Myb domain
PfamPF002491.5E-16112156IPR001005SANT/Myb domain
CDDcd001672.88E-14114157No hitNo description
Gene3DG3DSA:1.10.10.605.7E-24114160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTEVDPTAAP TTAANELLAT ADEAKTSAVA GGERGEGSEL GGGEVEASDV GEGSGAGRVR  60
GPWSPEEDTV LSQLVAQFGA RNWSMIARGI PGRSGKSCRL RWCNQLDPCV KRKPFTEEED  120
RLIISAHAIH GNRWAAIARL LPGRTDNAIK NHWNSTLRRR CMGLGIHVSS YADTMGGYSS  180
FEKTKASSEE TMSIGDINSM NPPEVRNVMT NNEIRQYENK HPQKDGAEVE GHPTLYRPKS  240
RLSAFSVYNP LGKPTTESTP KIFPRQGPLF QPLIPDAGTC KLFDGVGCEP MVPSQCGHGC  300
CSSELRGSHA HDSLLGPEFV DYLEPPSFSS DELISITTDL NNMAWIKSGL ENVGAGVTEN  360
TTNLTASNGY MQFENGSGKF LGAMQMQSAT MPQQHFAMPA EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-41591606107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2688010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233746.10.0transcription factor MYB1
SwissprotQ425752e-87MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A151S1V50.0A0A151S1V5_CAJCA; Transcription factor MYB44
STRINGGLYMA14G06870.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-103myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]